BAC Information

Click to search

BAC

Clone NameMSMg01-514E10
Chromosome10 (Build37)
Map Location 14,620,604 - 14,621,126
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr
Downstream geneLOC666917, LOC637043, LOC100039492, LOC671439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514E10.T7 (MSMg01no514_e10.b1)MSMg01-514E10.TJ (MSMg01no514_e10.g1)
ACCAG586799AG586800
length743759
length of high quality
(start - end)
675 (64 - 738)523 (74 - 596)
definitionCHROMAT_FILE: MSMg01no514_e10.b1 PHD_FILE: MSMg01no514_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:06 2005CHROMAT_FILE: MSMg01no514_e10.g1 PHD_FILE: MSMg01no514_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGATGCATACCGAATGGCAGAGAAACACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAAC
TCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTTCGA
TACTCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGAA
TGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGGG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGAAGACATGCTTGCCTCTGCTCAG
AATACTCCAATGGCTTTCTGACTCAGGCAGAGGAAGCTTGATTTTAATTT
CTTTCTACAGAGTAACTGAATGCTCTATAACTTAGTGGCTTAAAGTGACA
GCCTGTCGCCTCTAATGTTTAGTTCTGAGATTCAGTGGGTTCAGAAAGCA
GTTTTTATTTCAGGTGGCTGGAGTCATAGGAGTGTGGAGCTAGATTCATG
TAAGTCTTGATGGGCTGAAGAAATTGGGCATACACAGTGGTTTCTTCCTT
CACACAACTAGGTCTTTTGTAGCTGTGATCAGCTGGAGCATCGCTGAGCA
GGTTGCATCCCAGAGGACTAACATCTGCTTCCTCACTGTGGAATAGTCTC
AGTAGATTTCTTCGTCTTGGCTAGCTTCCCTTTGAGTACGCATTCAGAGA
CATTCATTTACTACTTATAACTGAGTAATGAATGACCCTAGGATAGAGGC
AGAAGCCTTTATGAAAAAGTGATTGCTGAGATTTGCATTTTCCAGATGAT
TTAGGATGTTGGATGTTTCTTTAAGTGATTCACAGTTAATATTTATATCT
CTATTGAGAAATCTCTCTTTAGCTCTGTAACGTATTTCATTTTCTTTGAT
ACTTTCTTTATTTACATTTTCAATGTTATCCCCTTTCCCCAGTCACCCAG
CCCTGGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_e10.g1 MSMg01no514_e10.g1 CHROMAT_FILE:
MSMg01no514_e10.g1 PHD_FILE: MSMg01no514_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:07 2005
         (523 letters)



>mm_chr10_14620404_14621326
          Length = 923

 Score =  996 bits (515), Expect = 0.0
 Identities = 521/523 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaagacatgcttgcctctgctcagaatactccaatggctttctgactcaggcagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaagacatgcttgcctctgctcagaatactccaatggctttctgactcaggcagagg 260

                                                                       
Query: 61  aagcttgattttaatttctttctacagagtaactgaatgctctataacttagtggcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcttgattttaatttctttctacagagtaactgaatgctctataacttagtggcttaa 320

                                                                       
Query: 121 agtgacagcctgtcgcctctaatgtttagttctgagattcagtgggttcagaaagcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 321 agtgacagcctgtcgcctctaatgtttagttctgagattcagtgggtttggaaagcagtt 380

                                                                       
Query: 181 tttatttcaggtggctggagtcataggagtgtggagctagattcatgtaagtcttgatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatttcaggtggctggagtcataggagtgtggagctagattcatgtaagtcttgatgg 440

                                                                       
Query: 241 gctgaagaaattgggcatacacagtggtttcttccttcacacaactaggtcttttgtagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgaagaaattgggcatacacagtggtttcttccttcacacaactaggtcttttgtagc 500

                                                                       
Query: 301 tgtgatcagctggagcatcgctgagcaggttgcatcccagaggactaacatctgcttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgatcagctggagcatcgctgagcaggttgcatcccagaggactaacatctgcttcct 560

                                                                       
Query: 361 cactgtggaatagtctcagtagatttcttcgtcttggctagcttccctttgagtacgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactgtggaatagtctcagtagatttcttcgtcttggctagcttccctttgagtacgcat 620

                                                                       
Query: 421 tcagagacattcatttactacttataactgagtaatgaatgaccctaggatagaggcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagagacattcatttactacttataactgagtaatgaatgaccctaggatagaggcaga 680

                                                      
Query: 481 agcctttatgaaaaagtgattgctgagatttgcattttccaga 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcctttatgaaaaagtgattgctgagatttgcattttccaga 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)