BAC Information

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BAC

Clone NameMSMg01-514E11
Chromosome10 (Build37)
Map Location 14,620,604 - 14,621,228
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr
Downstream geneLOC666917, LOC637043, LOC100039492, LOC671439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514E11.T7 (MSMg01no514_e11.b1)MSMg01-514E11.TJ (MSMg01no514_e11.g1)
ACCAG586801AG586802
length734739
length of high quality
(start - end)
593 (67 - 659)625 (75 - 699)
definitionCHROMAT_FILE: MSMg01no514_e11.b1 PHD_FILE: MSMg01no514_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:07 2005CHROMAT_FILE: MSMg01no514_e11.g1 PHD_FILE: MSMg01no514_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAAT
TCTCACCTGTTGCATACCGAATGGCAGAGAAACACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATAT
ATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAA
CTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTTCG
ATACTCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAAGA
ATGAAGACTGAAGTGTGGACACTATGCCCCTCCC
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGAAGACATGCTTGCCTCTGCTCA
GAATACTCCAATGGCTTTCTGACTCAGGCAGAGGAAGCTTGATTTTAATT
TCTTTCTACAGAGTAACTGAATGCTCTATAACTTAGTGGCTTAAAGTGAC
AGCCTGTCGCCTCTAATGTTTAGTTCTGAGATTCAGTGGGTTCAGAAAGC
AGTTTTTATTTCAGGTGGCTGGAGTCATAGGAGTGTGGAGCTAGATTCAT
GTAAGTCTTGATGGGCTGAAGAAATTGGGCATACACAGTGGTTTCTTCCT
TCACACAACTAGGTCTTTTGTAGCTGTGATCAGCTGGAGCATCGCTGAGC
AGGTTGCATCCCAGAGGACTAACATCTGCTTCCTCACTGTGGAATAGTCT
CAGTAGATTTCTTCGTCTTGGCTAGCTTCCCTTTGAGTACGCATTCAGAG
ACATTCATTTACTACTTATAACTGAGTAATGAATGACCCTAGGATAGAGG
CAGAAGCCTTTATGAAAAAGTGATTGCTGAGATTTGCATTTTCCAGATGA
TTTAGGATGTTGGATGTTTCTTTAAGTGATTCACAGTTAATATTTATATC
TCTATTGAGAATTCTCTCTTTAGCTCTGTAACGTATTTCATTTTCTTTGA
TACTTTCTTTATTTACATTTCAAATGTTATCCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_e11.g1 MSMg01no514_e11.g1 CHROMAT_FILE:
MSMg01no514_e11.g1 PHD_FILE: MSMg01no514_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:07 2005
         (625 letters)



>mm_chr10_14620404_14621428
          Length = 1025

 Score = 1193 bits (617), Expect = 0.0
 Identities = 623/625 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaagacatgcttgcctctgctcagaatactccaatggctttctgactcaggcagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaagacatgcttgcctctgctcagaatactccaatggctttctgactcaggcagagg 260

                                                                       
Query: 61  aagcttgattttaatttctttctacagagtaactgaatgctctataacttagtggcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcttgattttaatttctttctacagagtaactgaatgctctataacttagtggcttaa 320

                                                                       
Query: 121 agtgacagcctgtcgcctctaatgtttagttctgagattcagtgggttcagaaagcagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 321 agtgacagcctgtcgcctctaatgtttagttctgagattcagtgggtttggaaagcagtt 380

                                                                       
Query: 181 tttatttcaggtggctggagtcataggagtgtggagctagattcatgtaagtcttgatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatttcaggtggctggagtcataggagtgtggagctagattcatgtaagtcttgatgg 440

                                                                       
Query: 241 gctgaagaaattgggcatacacagtggtttcttccttcacacaactaggtcttttgtagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgaagaaattgggcatacacagtggtttcttccttcacacaactaggtcttttgtagc 500

                                                                       
Query: 301 tgtgatcagctggagcatcgctgagcaggttgcatcccagaggactaacatctgcttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgatcagctggagcatcgctgagcaggttgcatcccagaggactaacatctgcttcct 560

                                                                       
Query: 361 cactgtggaatagtctcagtagatttcttcgtcttggctagcttccctttgagtacgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactgtggaatagtctcagtagatttcttcgtcttggctagcttccctttgagtacgcat 620

                                                                       
Query: 421 tcagagacattcatttactacttataactgagtaatgaatgaccctaggatagaggcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagagacattcatttactacttataactgagtaatgaatgaccctaggatagaggcaga 680

                                                                       
Query: 481 agcctttatgaaaaagtgattgctgagatttgcattttccagatgatttaggatgttgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcctttatgaaaaagtgattgctgagatttgcattttccagatgatttaggatgttgga 740

                                                                       
Query: 541 tgtttctttaagtgattcacagttaatatttatatctctattgagaattctctctttagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtttctttaagtgattcacagttaatatttatatctctattgagaattctctctttagc 800

                                    
Query: 601 tctgtaacgtatttcattttctttg 625
           |||||||||||||||||||||||||
Sbjct: 801 tctgtaacgtatttcattttctttg 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)