Query= MSMg01no515_m03.b1 MSMg01no515_m03.b1 CHROMAT_FILE:
MSMg01no515_m03.b1 PHD_FILE: MSMg01no515_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:12 2005
(705 letters)
>mm_chr10_69124947_69126054
Length = 1108
Score = 1282 bits (663), Expect = 0.0
Identities = 692/703 (98%), Gaps = 3/703 (0%)
Strand = Plus / Plus
Query: 6 gaattctgaatcctttccactggagcttttttgtaaaggttggagctgtactaggggcat 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgaatcctttccactggagcttttttgtaaaggttggagctgtactaggggcat 265
Query: 66 ctaaggctttgtcgcaggctggacacagtcccaggttgcattatgagtctggctgttttg 125
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctaaggctttgtctcaggctggacacagtcccaggttgcattatgagtctggctgttttg 325
Query: 126 ctcaactgttccacaagggggcagtgcaggaaagccagcaactgatctgaggaggctttc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctcaactgttccacaagggggcagtgcaggaaagccagcaactgatctgaggaggctttc 385
Query: 186 caaagaatgtggcactcct---cctctggaagagattgtttcctgatctagagattgagg 242
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caaagaatgtggcactccttctcctctggaagagattgtttcctgatctagagattgagg 445
Query: 243 gtaaactgaatccgagctcttaagaaacaaacacagagcgggcagtggtggcgtacatct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 446 gtaaactgaatccgagctcttaagaaacaaacacagagcgggcagtggtggcgcacgtct 505
Query: 303 ttgatcccagcacttgggaggcaaaggcaggtggatttctgagttccaggccagcctggt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgatcccagcacttgggaggcaaaggcaggtggatttctgagttccaggccagcctggt 565
Query: 363 ctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaccca 422
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 566 ctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaaccca 625
Query: 423 aaaaacaaaaacaaaaacaaaacaaaacaaaaaagaaataaacacagacagagacagata 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 626 aaaaacaaaaacaaaaacaaaacaaaacaaaaaagaaataaacacagacagagacaaata 685
Query: 483 cagatactagcacccaaccaatagacagaagcgggaacccctgtggttgaattgggggaa 542
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 686 cagatactagcacccaaccaatggacagaagcggggacccctgtggttgaattgggggaa 745
Query: 543 aagctggaagaagctgaggagggtgaccctataggaagaccaacagtctcaactaatctg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aagctggaagaagctgaggagggtgaccctataggaagaccaacagtctcaactaatctg 805
Query: 603 gactcccgagatctctcagacactgagccaccaaccagacaccataaactagcaggtctg 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 806 gactcccgagatctctcagacactgagccaccaaccagacaccataaactagcaggtccg 865
Query: 663 aggccacatatacagcagaggactgactggttaggcctcagtg 705
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aggccacatatacagcagaggactgactggttaggcctcagtg 908
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1108
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1098
Effective search space: 763110
Effective search space used: 763110
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no515_m03.g1 MSMg01no515_m03.g1 CHROMAT_FILE:
MSMg01no515_m03.g1 PHD_FILE: MSMg01no515_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:12 2005
(685 letters)
>mm_chr10_69200806_69201890
Length = 1085
Score = 1301 bits (673), Expect = 0.0
Identities = 682/685 (99%)
Strand = Plus / Minus
Query: 1 tttccaggcttcttaacaatgacaaggaaagaagaaaaaagaaaaagttaaactagctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 tttccaggcttcttaacaatgacaaggaaagaagaaaaaagaaaaagttaaactagctat 826
Query: 61 ttctggaaaagtctaagattcccgagttttccagctgacagagggctttgacattacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ttctggaaaagtctaagattcccgagttttccagctgacagagggctttgacattacatt 766
Query: 121 ttcaaatctccttgcgccaccttctgtatgcatggctgcgtgggaggggagatagaactg 180
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 765 ttcaagtctccttgcgccaccttctgtgtgcatggctgcgtgggaggggagatagaactg 706
Query: 181 ctggattcgtgttctgattgagatcttaagggaataggtgttggtccaacttcactgcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctggattcgtgttctgattgagatcttaagggaataggtgttggtccaacttcactgcaa 646
Query: 241 ctattgctttattctagagagactgactgacaagagcatcctgctaagacagcaagaaac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ctattgctttattctagagagactgactgacaagagcatcctgctaagacagcaagaaat 586
Query: 301 ttaacaaagaccagaccgtgacatttgtttcattttgtttcaatttcctcgactcctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttaacaaagaccagaccgtgacatttgtttcattttgtttcaatttcctcgactcctttt 526
Query: 361 ttggtggcaggagatccaaggaaccaggcatcagaaccgcctctcgaaggaaaatcactt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttggtggcaggagatccaaggaaccaggcatcagaaccgcctctcgaaggaaaatcactt 466
Query: 421 tcatctttcaatttactattgtggagctttatctaaaaaagagaaactcaattacgtttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tcatctttcaatttactattgtggagctttatctaaaaaagagaaactcaattacgtttt 406
Query: 481 gggatttctgtgtatgatatagccataaaagaaaaatcagggaaagaaaaaagaaagaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gggatttctgtgtatgatatagccataaaagaaaaatcagggaaagaaaaaagaaagaaa 346
Query: 541 aggctgagatctatggaaaatgatcagtggttctttctacgcaaggtcagtgaaaatgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aggctgagatctatggaaaatgatcagtggttctttctacgcaaggtcagtgaaaatgaa 286
Query: 601 aatcaccctaggtaaactagtatgaaccggagcccagacacagctaacttttgaacacat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aatcaccctaggtaaactagtatgaaccggagcccagacacagctaacttttgaacacat 226
Query: 661 atttttaaatctttatttaagcctg 685
|||||||||||||||||||||||||
Sbjct: 225 atttttaaatctttatttaagcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
