Query= MSMg01no516_i02.b1 MSMg01no516_i02.b1 CHROMAT_FILE:
MSMg01no516_i02.b1 PHD_FILE: MSMg01no516_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:15 2005
(656 letters)
>mm_chr10_104952514_104953567
Length = 1054
Score = 1019 bits (527), Expect = 0.0
Identities = 630/705 (89%), Gaps = 67/705 (9%)
Strand = Plus / Minus
Query: 5 gaattcttgcagtgtattctactaatattttctgctaatattatctactaatattatctt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaattcttgcagtg-attctactaatattttctgctaatattatctactaatattatctt 726
Query: 65 ccatggattgaatccagaaccttgtgcatgctagctaagcactctactgctgagctacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ccatggattgaatccagaaccttgtgcatgctagctaagcactctactgctgagctacag 666
Query: 125 cctcaggggtggctaatatttgggagatcactaagtc----------------------- 161
||||||||||||||||||||||||| |||||||||||
Sbjct: 665 cctcaggggtggctaatatttgggatatcactaagtctctctctctctctctctctctct 606
Query: 162 ----------------------ccc---------c-ccccctctctctctctctgttgta 189
||| | | | ||||||||||||||||||||
Sbjct: 605 ctctctctctctctctctctctccctctctctctctctctctctctctctctctgttgta 546
Query: 190 taggtgtgcatgtctatggggagatctaaaattatactgttttccacttccttctcttga 249
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 545 taggtgtgcatgtctatggggagatctaaagttatactgttttccacttctttctcttga 486
Query: 250 tatgagagctctttacaaacccagaactcaccaaaatgcaggtctggctagccagcttgc 309
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tataagagttctttacaaacccagaactcaccaaaatgcaggtctggctagccagcttgc 426
Query: 310 tcaggaagttctgtgtttttgctttttttttttttaggctggactcatggtgggccacca 369
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 425 tcaggaagttctgtgtttttgc--tttttttttttaggctggactcatggtggg------ 374
Query: 370 cacccacttagaagttgcatggattctgggaacctgaactgtgtgctctcttggttgaat 429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ---ccacttagaagttgcatggattctgggaacctgaactgtgtgctctcttggttgaat 317
Query: 430 agcagatactttagctgctaatgcatcttgctagcccctctacattatattttgagaaag 489
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 316 agcagatactttagctgctaatgcatctcgctagcccctctacattatattttgagaaag 257
Query: 490 aatcttgactgaatctcaccaattcaactagaccacgtggctagcaagccccatggattc 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aatcttgactgaatctcaccaattcaactagaccacgtggctagcaagccccatggattc 197
Query: 550 tcctctctctggccaccagtattgggcttataggttataggtacatatagcaccagcttt 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tcctctctctggccaccagtattgggcttataggttataggtacatatagcaccagcttt 137
Query: 610 ttaatataggtgctggagatcaagtcatttatggaggcatctcta 654
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttaatataggtgctggagatcaagtcatttatggaggcatctcta 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1054
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1044
Effective search space: 674424
Effective search space used: 674424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_i02.g1 MSMg01no516_i02.g1 CHROMAT_FILE:
MSMg01no516_i02.g1 PHD_FILE: MSMg01no516_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:15 2005
(669 letters)
>mm_chr10_104817403_104818471
Length = 1069
Score = 1263 bits (653), Expect = 0.0
Identities = 665/669 (99%)
Strand = Plus / Plus
Query: 1 tgagcatggctgtttgcatgtgtcatacaaggtgacactgatttcaagtcatatttcaac 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagcatggctgtttgcatgtatcatacaaggtgacactgatttcaagtcatatttcaac 260
Query: 61 ttgttctgacactctacaggatttgcactgtattacagaaccctaaattggaagcaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttctgacactctacaggatttgcactgtattacagaaccctaaattggaagcaaata 320
Query: 121 tcaagggaaagaggagtctaaccccattgctatggtgttttcgttggcatggtgacccat 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagggaaagacgagtctaaccccattgctatggtgttttcgttggcatggtgacccat 380
Query: 181 tcttcctcattaggctaacgtggggaaatcaagcggttagaaatttcttgcgtacccatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tcttcctcattaggctaacgtggggaaatcaagcggttagaaatttcttgtgtacccatg 440
Query: 241 gcaaggcccttcaacagctaactatttgcaactgaagtacccaaagagttcaattagtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaggcccttcaacagctaactatttgcaactgaagtacccaaagagttcaattagtgg 500
Query: 301 aactgtgcgggtgtgccccggcccctaacccactgtacgaatagcaggctgctgaatgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgtgcgggtgtgccccggcccctaacccactgtacgaatagcaggctgctgaatgtc 560
Query: 361 agcctcttgagtaatcttgtttagcttcaaataagagatttaagacttcccaccaagcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcctcttgagtaatcttgtttagcttcaaataagagatttaagacttcccaccaagcag 620
Query: 421 tgagctgtggtcaaatcaggttagctccaaaacaatccagcctttatgaagaaaatatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagctgtggtcaaatcaggttagctccaaaacaatccagcctttatgaagaaaatatat 680
Query: 481 gaagaaaaataccctctgtcacctaagaaacaacgttaatagaaaaggatgtttcaaaca 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 gaagaaaaataccctctgtcacctaagaaacaacgttaacagaaaaggatgtttcaaaca 740
Query: 541 aaagtaaaaacacccattttttaaagtagcttaacattttggtttgtgttaaattccttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaagtaaaaacacccattttttaaagtagcttaacattttggtttgtgttaaattccttt 800
Query: 601 ccataccttcaacatataactacagcaaaaacaataaaatccaaagagctcacaattaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccataccttcaacatataactacagcaaaaacaataaaatccaaagagctcacaattaat 860
Query: 661 tgaatttgc 669
|||||||||
Sbjct: 861 tgaatttgc 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
