Query= MSMg01no517_n14.b1 MSMg01no517_n14.b1 CHROMAT_FILE:
MSMg01no517_n14.b1 PHD_FILE: MSMg01no517_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:04 2005
(603 letters)
>mm_chr10_25988133_25989135
Length = 1003
Score = 1056 bits (546), Expect = 0.0
Identities = 573/582 (98%)
Strand = Plus / Plus
Query: 4 ggaattctctgaggggccaaatttaggaaattctagaaaagataggcaaaagtggttttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgaggggccaaatttaggaaattctagaaaagataggcaaaagtggttttg 263
Query: 64 agttcaagagacttctattgggtttgctttaacttggaggcccagtcttcttcacataca 123
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 264 agttcaagagacttctattgggtttgctttaccttggaggccccgtcttcttcacataca 323
Query: 124 ttttgttaaactcatctaacagtctctaaaacacgtccttagggccctaagattgggtat 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 ttttgttaaactcatctaacagtctctaaaacacgcccttagggccctaagattgggtat 383
Query: 184 ttttcaagagttgtttctgaaaagccagtagtgttccagttttgccttttgttggacact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttcaagagttgtttctgaaaagccagtagtgttccagttttgccttttgttggacact 443
Query: 244 gctgaaacatagccaccatagcttggtttctgttgttgtgataacacagatcagaagcaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctgaaacatagccaccatagcttggtttctgttgttgtgataacacagatcagaagcaa 503
Query: 304 cttggaaagagtttacttggcttacaggttccatagtccatgatcgggagaagccaagtc 363
|||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 504 cttggaaagagtttgcttggcttacaggttccatagtccatggtcaggagaagccaagtc 563
Query: 364 aggaaacccagaacaagaacctggagcaggaacctggaggcaggaactgaagcagaaact 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggaaacccagaacaagaacctggagcaggaacctggaggcaggaactgaagcagaaact 623
Query: 424 ttggaggaatactatttactagcttgctcccctggcctttcttacactgtccaggcaggg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttggaggaatactatttactagcttgctcccctggcctttcttacactgtccaggcaggg 683
Query: 484 gccctccaatgttggttaacaattccaaagatgtccacagccacccccacaggccagtct 543
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gccctccaatgtaggttagcaattccaaagatgtccacagccacccccacaggccagtct 743
Query: 544 agtagaggccatttctcagtcaagatcctctcttcttttctc 585
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 744 agtagaggccatttctcagtcaagatcctctcttctcttctc 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_n14.g1 MSMg01no517_n14.g1 CHROMAT_FILE:
MSMg01no517_n14.g1 PHD_FILE: MSMg01no517_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:04 2005
(664 letters)
>mm_chr10_26026896_26027966
Length = 1071
Score = 1183 bits (612), Expect = 0.0
Identities = 654/670 (97%), Gaps = 8/670 (1%)
Strand = Plus / Minus
Query: 2 cctctgaaggaactgaaaagggcctcgccctggtatgtttgtggaagggtcaggcctcct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cctctgaaggaactgaaaagggcctcgccctggtatgtttgtggaagggtcaggcctcct 716
Query: 62 tgcatcctgacttccgtggggaagaagggagccttctcacccccttaagcttccaggctg 121
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct: 715 tgcatcctgacttccgtggggaagaagggaaccttctcaactccttaagcttccaggctg 656
Query: 122 catccaccttctggtcctgactcgtcttttaggatgtatgtttcaaccattcactcactt 181
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 655 catccaccttctggtcctgactcgtcttttaggatgtatgtttcaaccactcactcactt 596
Query: 182 cttcacctgtttctgtcctccaagtacaggactcatctcctttgcaatatgactttagga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cttcacctgtttctgtcctccaagtacaggactcatctcctttgcaatatgactttagga 536
Query: 242 tcagaagatatataatgtat--ttttctgagttgcttttcagattcacaaaaa-gtccac 298
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 535 tcagaagatatataatgtatatttttctgagttgcttttcagattcacaaaaaagtccac 476
Query: 299 ccaaatcttctctttccaagaaataatacatttcataaaagtattaactgtttt--aatc 356
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 475 ccaaatcttctctttccaagaaataatacctttcataaaagtattaactgtttttaaatc 416
Query: 357 ttaaaattatcagtaaaatatggagtcgtttttataaagacttcagatcatgctttttgg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttaaaattatcagtaaaatatggagtcgtttttataaagacttcagatcatgctttttgg 356
Query: 417 tgaaaggtgtggatccatttcccttaactgcagttttaagtaggaagagtgttctgtagt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgaaaggtgtggatccatttcccttaactgcagttttaagtaggaagagtgttctgtagt 296
Query: 477 agtagtagtagtagtgcctattttcttagaaatttattttaaaaaaacaaa--caaacac 534
||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct: 295 agtagtagtagtagtgcctattttcttagaaatttatttaaaaaaaaaaaaaacaaacac 236
Query: 535 aaacagcattattactgacttgttcttaatgtagtgccttaatcattttctgattgctgt 594
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 235 aaacagcattattactgacttgttcttaatgtagtgccttaatcattttccgattgctgt 176
Query: 595 gaagagacactgtgaccaaggtaacttatgaaaggaaacacttaattggggtcttggtta 654
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ga-gagacactgtgaccaaggtaacttatgaaaggaaacacttaattggggtcttggtta 117
Query: 655 tagtttcaga 664
||||||||||
Sbjct: 116 tagtttcaga 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1071
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1061
Effective search space: 693894
Effective search space used: 693894
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
