Query= MSMg01no517_n17.b1 MSMg01no517_n17.b1 CHROMAT_FILE:
MSMg01no517_n17.b1 PHD_FILE: MSMg01no517_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:05 2005
(614 letters)
>mm_chr10_42053083_42054096
Length = 1014
Score = 1174 bits (607), Expect = 0.0
Identities = 609/610 (99%)
Strand = Plus / Minus
Query: 5 gaattcttgactggaaccctccttccacctcatgctttatttggttttattcctattgaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gaattcttgactggaaccctccttccacctcatgctttatttggttttattcctattgaa 755
Query: 65 actactggttgggaactgcttctgggtttgtgtcctgtcttggcacagtgtcaggaaatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 actactggttgggaactgcttctgggtttgtgtcctgtcttggcacagtgtcaggaaatg 695
Query: 125 ctaaaggatgaatggcttttatctgtgccatttggccaagattgctgctggttgtctttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ctaaaggatgaatggcttttatctgtgccatttggccaagattgctgctggttgtctttg 635
Query: 185 gatgcccccgtggtgattagcatcaggatggggccgtttattagcaggctgagtcagtcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gatgcccccgtggtgattagcatcaggatggggccgtttattagcaggctgagtcagtcc 575
Query: 245 aggaatcgctatggccctttctcttcccagcatcaggaccattcttaaggaattcttttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aggaatcgctatggccctttctcttcccagcatcaggaccattcttaaggaattcttttc 515
Query: 305 ttacctatgctgactcttgacaaagccaggttctgaagagagcagctagccaccctccct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttacctatgctgactcttgacaaagccaggttctgaagagagcagctagccaccctccct 455
Query: 365 aaagcagaggcctcaagtgatatcgatgataaagaccttagtggaaaattggtctggttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaagcagaggcctcaagtgatatcgatgataaagaccttagtggaaaattggtctggttt 395
Query: 425 ttatgggagtatgaatccagtgctgtgttttgttctcagtccttcctgctgtaaccctgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttatgggagtatgaatccagtgctgtgttttgttctcagtccttcctgctgtaaccctgg 335
Query: 485 ttagctctgtaggaggcacagttgtggtgtcagaaggcaccttttgcgtctctcttgctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ttagctctgtaggaggcacagttgtggtgtcagaaggcaccttttgcgtctctcttgctt 275
Query: 545 gtttgccagcatacatcttctgtaaccacggcctccacttgtcctgtggcttcactgtan 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtttgccagcatacatcttctgtaaccacggcctccacttgtcctgtggcttcactgtag 215
Query: 605 ggatgtactt 614
||||||||||
Sbjct: 214 ggatgtactt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_n17.g1 MSMg01no517_n17.g1 CHROMAT_FILE:
MSMg01no517_n17.g1 PHD_FILE: MSMg01no517_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:05 2005
(576 letters)
>mm_chr10_41911066_41912040
Length = 975
Score = 963 bits (498), Expect = 0.0
Identities = 565/604 (93%), Gaps = 30/604 (4%)
Strand = Plus / Plus
Query: 1 cttgaaagcgggacagtcttcacaacg--------------cactcgctatttcaggagc 46
||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 187 cttgaaagcgggacagtcttcacaacggtgagtgccgggaacactcgctacttcaggagc 246
Query: 47 atcgccttaggcacagagtttgctctc-agcagcacaaatccctgtgactgaaagacagt 105
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 247 atcgccttaggcacagagtttgctctcgag-agcacaaatccttgtgactgaaagacagt 305
Query: 106 gttcccaaggagagcttaaagtaaaaacacaacacaaaacaaaacaggtttgcatgaagc 165
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 306 gttcccaaagagagcttaaagtaaaaacacaacacaaaacaaaacaggttcgcatgaagc 365
Query: 166 cttagctaagtgaaggagccaggctctttgagtggccggcccctactttcctccctgctc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttagctaagtgaaggagccaggctctttgagtggccggcccctactttcctccctgctc 425
Query: 226 actgcaatccccagatgctgcaggttctaggacctccggcacccagcagagccttctgct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 actgcaatccccagatgctgcaggttctaggacctccggcacccagcagagccttctgct 485
Query: 286 tgcggagcacaagtgcagactgataatgcttcccaggaagaaaactcctgtttcttgtaa 345
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 486 tgcggagcacaagtgcagactgataatgcttcc-aggaagaaaactcctgtttcttgtaa 544
Query: 346 gatgaaactgagtgaaaggcgcatataaacattcaacggactctcacccatggaatcagt 405
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 545 gatgaaactgagtaaaaggcgcatataaacattcaacagactctcacccatggaatcagt 604
Query: 406 cttcctgtgtttctgtacagcccaccatataaagccctcaaattctaccattaaaggtct 465
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 605 cttcctgtgtttctgtacagcccaccatataaagccctcaaatcccaccattaaaggtct 664
Query: 466 tgctactcagtctcaagctgctgtcacaggaagagatccaccatctacagaagagaactg 525
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgctactcagtctcatgctgctgtcacaggaagagatccaccatctacagaagagaactg 724
Query: 526 gagccttgaagaaatgttca-------------tgacctgaatagttcctatttaccttg 572
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 725 gagccttgaagaaatgttcacagacctaagccatgacctgaatagttcctatttaccttg 784
Query: 573 cccg 576
||||
Sbjct: 785 cccg 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
