Query= MSMg01no517_p01.b1 MSMg01no517_p01.b1 CHROMAT_FILE:
MSMg01no517_p01.b1 PHD_FILE: MSMg01no517_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:12 2005
(595 letters)
>mm_chr10_110768402_110769392
Length = 991
Score = 984 bits (509), Expect = 0.0
Identities = 563/583 (96%), Gaps = 7/583 (1%)
Strand = Plus / Minus
Query: 15 ccccccc-aagcattcacccctggatcttggacccacctggctgaccaggctcatgccac 73
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 cccccccaaagcattcacccctggatcttggacccacctggctgaccaggctcatgccac 732
Query: 74 cacctctgccgctggcgttggcactgccactgtagctgaccggtgacccaggaacccagc 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cacctctgccgctggcgttggcactgccactgtagctgaccggtgacccaggaacccagc 672
Query: 134 tgcctctccctcacaggctgcccagacctctttgcttctcttctaagatctgtaacactc 193
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 671 tgcctgtccctcacaggctgcccagacctctttgcttctcttctaagatctgtgacactc 612
Query: 194 ctggcatttctagcctgactggagccccatggaacctgcttctcagtcttctctctggca 253
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ccggcatttctagcctgactggagccccatggaacctgcttctcagtcttctctctggca 552
Query: 254 cacagaggcttctaattcctcagagggaagacagtcaaggtgtaaatctgattaaga-tt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 551 cacagaggcttctaattcctcagagggaagacagtcaaggtgtaaatctgattaagattt 492
Query: 313 ttccttcttaaagatcctccagtacgtagggaagcaaataccagttcctcggcttgtata 372
|||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||
Sbjct: 491 ttccttcttaaagatcatccagtacatagggaagcaaataccagttccccggctcgtata 432
Query: 373 tcgtttgtgatctggctccgtcttgcttattttaacctctccctttacaacacccaactc 432
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 431 tcgtttgtgatctggctccgtcttgcttattttaacctctccctttacgacacccaactc 372
Query: 433 tgtgttgaaactatactattggaaatttcaaaatcctcagtgctcccagtactcctccca 492
||||| ||||| ||| ||||||||||| || |||||||||||||||| |||||||||
Sbjct: 371 tgtgtcgaaac--tac---tggaaatttcagaaccctcagtgctcccagtgctcctccca 317
Query: 493 ctcttgctgtgtcagatagctttctatgactttaaaaaataacttagaaatagaactcac 552
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 316 ctcttgctgtgtcagatagctttctatgactttaaacaataacttagaaatagaactcac 257
Query: 553 cctgtgccctccccttcccgccttgctagtctcctgcattgtt 595
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cctgtgccctccccttcccgccttgctagtctcctgcattgtt 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 991
Length adjustment: 10
Effective length of query: 585
Effective length of database: 981
Effective search space: 573885
Effective search space used: 573885
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_p01.g1 MSMg01no517_p01.g1 CHROMAT_FILE:
MSMg01no517_p01.g1 PHD_FILE: MSMg01no517_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:12 2005
(627 letters)
>mm_chr10_110603107_110604142
Length = 1036
Score = 1149 bits (594), Expect = 0.0
Identities = 622/636 (97%), Gaps = 9/636 (1%)
Strand = Plus / Plus
Query: 1 cagagaacaattgaggtataggtaaattgcttgttacgctctctcttcccctggggtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagaacaattgaggtataggtaaattgcttgttacgctctctcttcccctggggtttc 260
Query: 61 atctaaatttgatcatgccgagagactgggatcagttgctgtgcttgctagaacctgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctaaatttgatcatgccgagagactgggatcagttgctgtgcttgctagaacctgttt 320
Query: 121 tgcagtgagattattaaaatgctggttttataaaaacaggttttataaaaggaagggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagtgagattattaaaatgctggttttataaaaacaggttttataaaaggaagggaaa 380
Query: 181 ggccatgcaatttaaaatgcactctattaaaagtccaactaatttctaacgtgttactct 240
||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||
Sbjct: 381 ggccatgcaatttaaaatgcactctattaaaagaccaactaatttctaacatgttgctct 440
Query: 241 ttcttttgggtagcaagtatgtactctgtcttttggtagcaagaatgactg-----tgct 295
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ttcttttgggtagcaagtatgtactctgtcttttggtagcaagaatgactgcagtgtgct 500
Query: 296 tgttcaaagtgttagcaaaggggatagatgaaatttaagaccttcctaaagctctttaat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttcaaagtgttagcaaaggggatagatgaaatttaagaccttcctaaagctctttaat 560
Query: 356 tatggagattacgttgttgcggtcaaattccatgtgaacagtttgagccccagagatcac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggagattacgttgttgcggtcaaattccatgtgaacagtttgagccccagagatcac 620
Query: 416 agaggtgcctagaaatgctgtttaattaaacctggacatggtttgctccttgcattgagt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaggtgcctagaaatgctgtttaattaaacctggacatggtttgctccttgcattgagt 680
Query: 476 tgtgctcattactgaatgtgtggtctgtgcaaatggtctgt----tcatttagaattgtc 531
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 tgtgctcattactgaatgtgtggtctgtgcaaatggtctgtctgttcatttagaattgtc 740
Query: 532 atttttatgtgttgcttttcttttctgagatagggttttgctgtgttgcctacctggcca 591
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 atttttatgtgttgcttttcttttctgagatagggttttgctgtgttgcctagctggcca 800
Query: 592 tggtattcattatgtagctccggcttggcaaaatcc 627
|||||||||||||||||||||||| |||||||||||
Sbjct: 801 tggtattcattatgtagctccggcatggcaaaatcc 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1036
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1026
Effective search space: 633042
Effective search space used: 633042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
