BAC Information

Click to search

BAC

Clone NameMSMg01-518K01
Chromosome10 (Build37)
Map Location 108,319,177 - 108,319,669
singlet/doubletsinglet
Overlap geneSyt1
Upstream geneEG628870, Ppp1r12a, Pawr, EG667814, EG368203
Downstream geneNav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518K01.T7 (MSMg01no518_k01.b1)MSMg01-518K01.TJ (MSMg01no518_k01.g1)
ACCAG590091AG590092
length744755
length of high quality
(start - end)
427 (50 - 476)557 (78 - 634)
definitionCHROMAT_FILE: MSMg01no518_k01.b1 PHD_FILE: MSMg01no518_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:05 2005CHROMAT_FILE: MSMg01no518_k01.g1 PHD_FILE: MSMg01no518_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGCAAATCTGGACTGCCACTCTCTGAACAGCTATAAATTTC
ACTCCACTGCACTGCCTCTCAGTTCACTGACTTGACACAATCACTGACTC
AAGAGATCTGCATGCCTCTGTCTCCTGAGAGCTGACATTAAGGGCATGTC
CCTTGACACCTGAACCCAAGCGTTTCTTTAACTGAAACTTGCTTTACATC
AACCAGGCTGGTCTTGACCTCCGAGCTCTACTTGCCTCTGTCTCCTGGGA
TTAAAGGCAGTCTGTATTCCAGCCAGATCAAGCAGACCTTGCAGGTCTAT
GGATGGTGATCCCTTGCCAGAGCAGCCATGTTGCTGGGTTAAAATTCCTC
TACAATCTTTAGATTTGTTGCACATTTTGTTAGTTTCCTAAATGAGAGAG
GAATGATAAATGATAATATTGTCCATCTGTCTAATAGAACAGGAAGATAT
ATACAGTTTAAAAGCATAACTGCATAGATTGTAGTAAGCTTGATAACTCA
TGATGATTTAACACAAACTGATACTTAGCTCAACCTGTGACAAGAGAAAC
AGCAAAATTCTATGGGAAATAAGTAAATAATATTACAGGGTCTTGGTTGG
GACCCATGCTAGTGTAAGTTTCTGCCTGGTAGTCAGTTTGTCTTGTAGTA
CTTTTCTGCGATCCCACACTCTCCTGTATTTCTTTGTTTCCTTT
NCGCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGAAAGCCACGAGAGGGTTT
TTATTAGCCCAAAGTAGTCATCATTTTTCTCAAAAAAAAAAAGAAAGAAA
AGAAAAAAGAAAAAGAAGAAAGGAAGGAAATAATGAAAGAAGAAAATAAA
ACGTCAAAGAATGAATGTGTAAGTTCACGGAAGAGACAAAAATAATTCTC
AACAGTCACCAGTGTCATGAGTTTTGAGGGAAAGTCTACAAAGTGATTGT
CTACATATATGCAGATGCACAGATCATCCAGATGTGAGTGTCCATGCTTC
ACACATGTGCAACAATAGGACAGTTCAGTGACCCTGTACCATGTGACAAG
GTGGCAGAGACCCTCTCAGGCAGTCACAGATAGGATGACAACCAATGTTC
TTTGCCCTGTTATCCAGGGTGCCGGTCTGTGATCTGTATGTGCCTTGTGT
GTTAGGTTCCTTTTTAACCTGTGTTGCTGCCTTGGTTTCTTAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATAAACATTTAAGAAAAA
TGGTGAGGGATAAAAATGTAATGCACTCCGGGGCAGCCATACAACCCAAG
TTACACAAGCAACATGGCGACTGGAATTGATGTTAATTATTGTTCTGACA
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_k01.g1 MSMg01no518_k01.g1 CHROMAT_FILE:
MSMg01no518_k01.g1 PHD_FILE: MSMg01no518_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:05 2005
         (557 letters)



>mm_chr10_108318981_108319937
          Length = 957

 Score =  919 bits (475), Expect = 0.0
 Identities = 487/493 (98%), Gaps = 4/493 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagggaaagccacgagagggtttttattagcccaaagtagtcatcatttttctcaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tagggaaagccacgagagggtttttattagcccaaagtagtcatcatttttctcaaaaaa 256

                                                                       
Query: 61  aaaaa----gaaagaaaagaaaaaagaaaaagaagaaaggaaggaaataatgaaagaaga 116
           |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaaaaaaaagaaagaaaagaaaaaagaaaaagaagaaaggaaggaaataatgaaagaaga 316

                                                                       
Query: 117 aaataaaacgtcaaagaatgaatgtgtaagttcacggaagagacaaaaataattctcaac 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaataaaacgtcaaagaatgaatgtgtaagttcacggaagagacaaaaataattctcaac 376

                                                                       
Query: 177 agtcaccagtgtcatgagttttgagggaaagtctacaaagtgattgtctacatatatgca 236
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agtcaccactgtcatgagttttgagggaaagtctacaaagtgattgtctacatatatgca 436

                                                                       
Query: 237 gatgcacagatcatccagatgtgagtgtccatgcttcacacatgtgcaacaataggacag 296
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 gatgcacagatcatccagatgtgagtgtccatgcttcacacatgtgcaacaacaggacag 496

                                                                       
Query: 297 ttcagtgaccctgtaccatgtgacaaggtggcagagaccctctcaggcagtcacagatag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttcagtgaccctgtaccatgtgacaaggtggcagagaccctctcaggcagtcacagatag 556

                                                                       
Query: 357 gatgacaaccaatgttctttgccctgttatccagggtgccggtctgtgatctgtatgtgc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gatgacaaccaatgttctttgccctgttatccagggtgccggtctgtgatctgtatgtgc 616

                                                                       
Query: 417 cttgtgtgttaggttcctttttaacctgtgttgctgccttggtttcttagagagagagag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cttgtgtgttaggttcctttttaacctgtgttgctgccttggtttcttagagagagagag 676

                        
Query: 477 agagagagagaga 489
           |||||||||||||
Sbjct: 677 agagagagagaga 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)