BAC Information

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BAC

Clone NameMSMg01-518M03
Chromosome10 (Build37)
Map Location 112,489,358 - 112,489,888
singlet/doubletsinglet
Overlap genenone
Upstream geneEG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2, LOC100042639, 4921506J03Rik
Downstream geneLOC100042655, LOC100042666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518M03.T7 (MSMg01no518_m03.b1)MSMg01-518M03.TJ (MSMg01no518_m03.g1)
ACCAG590190AG590191
length746748
length of high quality
(start - end)
636 (51 - 686)531 (78 - 608)
definitionCHROMAT_FILE: MSMg01no518_m03.b1 PHD_FILE: MSMg01no518_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:15 2005CHROMAT_FILE: MSMg01no518_m03.g1 PHD_FILE: MSMg01no518_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTACCTCTGAGACCCATTTTTTAATGGGGTTATTT
GATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAG
TCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GTCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAGT
TTCATCAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTATTCAGGAATTTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTC
CTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAA
ATTCGAATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTT
GAAAATACTGTCTTTCTTCCACTGGTTGGTTTTAGCTCCCTTGTCGAAGA
TCAAGTGACCATACATGTGTCGGTTCATTTCTGGGTCTTCAATTCTATTC
CATTGGTCTATTTGTCTGCCACTATAACAGTACCATGCAGTTTTTAATCA
CAATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAG
GTTCGTTTATCCTTGAGAAGAAGTTTTGCTATCCTAGGTTTTTTGT
GGACAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCATACTGTTGTGATTTGTA
CTGACAGAGCCCTGTGGCTCCAGGTCCATCCCTGAAACTTGTAATGGCCC
AGACCCAAACCTTCATTTGTTGTGAAGAGAGGCTTTGAAATACTTTGAAA
TCCAGCCTTCTGTAGTTTATTCCCAGAGAGTTGGAGAAAGGATTTGCCTT
ACTCCCACATGTTTATTTTTCCTGGCTTCAGAATCCTCATGGTAAGCTGA
TGTTGTCCACACAAATTTCGAGATAAAGTGATTAAGCCGGCATGCCCATG
AGCTATTGCTTCCATGAGCATATGAAATAGTCTATACAGGAAATTCCTGG
TGTTGGAAAGGCAGACATCTCATCGGTCTTGATCTAATTCCAAGCTGCAA
GTGTTTCTTGTAGCCTAGGGGAGTATAAAATGTCCCTCTGCAGATCATAT
TCAAATCTGTTTGGCAAGGAGATTGCTTTGCATCAAGGGAACCTGCATCC
AAGAACAGGCAGCATTTTGCACAGTGGCCACATTGTAGAAACAGCATACC
CATGGTAGAAATTTCAAGAGATGNTTATGAAAAAGATAATCTTTTCATTT
TAATTTCAAATACGTATCCCCAGGCCTACCTCATATGACTTTGACAAAAA
ACATGTGGGAAACTTTGGGAAGAGCCCCCCCTTAGAATCCAAATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_m03.g1 MSMg01no518_m03.g1 CHROMAT_FILE:
MSMg01no518_m03.g1 PHD_FILE: MSMg01no518_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:15 2005
         (531 letters)



>mm_chr10_112489158_112490088
          Length = 931

 Score =  980 bits (507), Expect = 0.0
 Identities = 525/531 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatcatactgttgtgatttgtactgacagagccctgtggctccaggtccatccctgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcatactgttgtgatttgtactgacagagccctgtggctccaggtccatccctgaaa 260

                                                                       
Query: 61  cttgtaatggcccagacccaaaccttcatttgttgtgaagagaggctttgaaatactttg 120
           |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 261 cttgtaatggcccagacccaaaccttcatttgctgtgaagggaggctttgaaatactttg 320

                                                                       
Query: 121 aaatccagccttctgtagtttattcccagagagttggagaaaggatttgccttactccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatccagccttctgtagtttattcccagagagttggagaaaggatttgccttactccca 380

                                                                       
Query: 181 catgtttatttttcctggcttcagaatcctcatggtaagctgatgttgtccacacaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgtttatttttcctggcttcagaatcctcatggtaagctgatgttgtccacacaaatt 440

                                                                       
Query: 241 tcgagataaagtgattaagccggcatgcccatgagctattgcttccatgagcatatgaaa 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgagataaagtgattaagctggcatgcccatgagctattgcttccatgagcatatgaaa 500

                                                                       
Query: 301 tagtctatacaggaaattcctggtgttggaaaggcagacatctcatcggtcttgatctaa 360
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtctataaaggaaattcctggtgctggaaaggcagacatctcatcggtcttgatctaa 560

                                                                       
Query: 361 ttccaagctgcaagtgtttcttgtagcctaggggagtataaaatgtccctctgcagatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccaagctgcaagtgtttcttgtagcctaggggagtataaaatgtccctctgcagatca 620

                                                                       
Query: 421 tattcaaatctgtttggcaaggagattgctttgcatcaagggaacctgcatccaagaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattcaaatctgtttggcaaggagattgctttgcatcaagggaacctgcatccaagaaca 680

                                                              
Query: 481 ggcagcattttgcacagtggccacattgtagaaacagcatacccatggtag 531
           ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcagcattttgcacggtggccacattgtagaaacagcatacccatggtag 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)