BAC Information

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BAC

Clone NameMSMg01-518P19
Chromosome10 (Build37)
Map Location 81,720,769 - 81,721,500
singlet/doubletsinglet
Overlap genenone
Upstream geneMatk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik
Downstream geneLOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11, Slc41a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518P19.T7 (MSMg01no518_p19.b1)MSMg01-518P19.TJ (MSMg01no518_p19.g1)
ACCAG590366AG590367
length768769
length of high quality
(start - end)		694 (47 - 740)695 (75 - 769)
definitionCHROMAT_FILE: MSMg01no518_p19.b1 PHD_FILE: MSMg01no518_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:34 2005CHROMAT_FILE: MSMg01no518_p19.g1 PHD_FILE: MSMg01no518_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATATAGGCATTTGTCTGTAGGCAAGAGCTGCATCAGGTGAGAG
GTGCGGGTGGCGGGGCTGGGGGGTGGGGGACAGAGAGAGAGAGAGAGACT
GAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGCCAGAATGCTTCTCACA
TTACAAAAATACATGCAAACTCACTGTATTGTTATGAACCAGTGCACTAA
GTCACTCAAGCTAGACTTAAAAATGAAACTGAGACAACTGTTGTGGTGGT
TTGGAGAGAATGACCCCCGTAGACTCATATATCTGTCTGTGGAACTGTTT
GGGAAGGATTAGAAGGTGCAGCTTTGTTGGAGGAGATGTGTCACTGGGAG
TGGCGTGGGTTATGAGGTTTCAAAAGCCCATACCTTCCCAGTTAACTCTG
TTTCTTGGTTGTTTCAACATATATTCTCTTAGCTACTGATCCAATACCAT
GCCAGCCTGTCTGTTGCCACGCTCCGTACTGTGATGGTCATGGATTCACC
CTTTGAAACTGTAAACAGGCCTCCAATTGAATGCTGTCTTTTATAAGTTG
CCTTAGTCATAGCAATTGTAAATTAAATAAGTAAATTAGATAGTTGCTTG
GGAAAATATAAATGGGTTCATGCCTTACTGCATACACAAGAGTAAACAAA
ATCCCTAAGAAATATAAAAAGAAATACACAGGTGTCATGCCAGCATGTGT
GTGTGTAGCTTTCTGTGG

CATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTATAACCACATGAGACAAGGAATA
GTTGAACGTGCTCATCGAACTTTAAATAATTGACTATATAATCTCGTTCT
TTATATATTCAAAATAGTAATGGTTTAAGATAATATTTTGGTATTTTTAG
AGAATGTGCATGTCAAATTGTAAAAAATTTGCTCTTGGTATCCTCAGTTC
CTGCCTGTTTCCACATAATGGTGTTAATTCTTGAGGACCTATACTTAATC
AATTGCTGCAAATGAATGCTCTTATTTCTGATTAATAAATAAATAAATTA
TACACATGTGACTATAATAACTTTTCAAGCATTCTAGTTACAACCGCTCT
TCAAGAGAAACAATTGAAAGTGTAATTAGTCACTGCCCATGTTATATTAA
AACTGACTATAACCGTCAAGTATTTGAGATGTTTTGTCAACAATTTAATA
ATTCTCAAAGACAAGGTATTGTGGAACTTTAAAAACTCTATCTTCTTAAA
AACAAAAAAGGGGAGAAATTATAACCCCATGCACATTATTTAAATCATAC
TTTTATTTTTAAGAATTTTGAAATTTGGATGTCAAAGAAGTTAATAAATG
CCTCATAATATCCTAAAACTAGACATAATCATGTCTAGGTGAGATGAAAA
GGATCCACTTATTGACACATGGCATGATCCTGAACAGAAAGTTAATATGG
GGAAAAGGGGGCAGTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_p19.b1 MSMg01no518_p19.b1 CHROMAT_FILE:
MSMg01no518_p19.b1 PHD_FILE: MSMg01no518_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:34 2005
         (694 letters)



>mm_chr10_81720607_81721700
          Length = 1094

 Score = 1021 bits (528), Expect = 0.0
 Identities = 663/740 (89%), Gaps = 57/740 (7%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatataggcatttgtctgtaggcaagagctgcatcaggtgagaggtgcgggtg 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 163 ggaattctatataggcatttgtctgcaggcaagagctgcatcaggtgagaggtgcgggta 222

                                                                       
Query: 64  gcggggc--tggggggtgggggacagagagagagagagagac-------tgagagag--- 111
           ||||||   |||||||||||||   | | | | | | | |         || | |||   
Sbjct: 223 gcgggggggtggggggtggggg---g-gtgggggggtggg--gtgggggtgggggagggc 276

                                                                       
Query: 112 agagaaagagagagagagagagagagccagaatgcttctcacattacaaaaatacatgca 171
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 277 agagaaagagagagagagagagag--ccagaatgcttctcacattacaaaaatacatgca 334

                                                                       
Query: 172 aactcactgtattgttatgaaccagtgcac------------------------------ 201
           |||||||||| |||||||||||||||||||                              
Sbjct: 335 aactcactgtgttgttatgaaccagtgcacaaagaacttgagtatatagcacatgtaaca 394

                                                                       
Query: 202 ---taagtcactcaagctagacttaaaaatgaaactgagacaactgttgtggtggtttgg 258
              |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 395 tcctaagtcactcaagctagacttaaaaatgaaaccgagacaactgttgtggtggtttgg 454

                                                                       
Query: 259 agagaatgacccccgtagactcatatatctgtctgtggaactgtttgggaaggattagaa 318
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 455 agagaatgacccccgtagactcatatatctgtatgtggaactgtttgggaaggattagaa 514

                                                                       
Query: 319 ggtgcagctttgttggaggagatgtgtcactgggagtggcgtgggttatgaggtttcaaa 378
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggtgcagctttgatggaggagatgtgtcactgggagtggcgtgggttatgaggtttcaaa 574

                                                                       
Query: 379 agcccataccttcccagttaactct----gtttcttggttgtttcaacatatattctctt 434
           ||||||| |||||||||||||||||    |||||||||||||||||||||||||||||||
Sbjct: 575 agcccatgccttcccagttaactctctctgtttcttggttgtttcaacatatattctctt 634

                                                                       
Query: 435 agctactgatccaataccatgccagcctgtctgttgccacgctccgtactgtgatggtca 494
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agctactgatccaatactatgccagcctgtctgttgccacgctccgtactgtgatggtca 694

                                                                       
Query: 495 tggattcaccctttgaaactgtaaacaggcctccaattgaatgctgtcttttataagttg 554
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 695 tggattcaccctttgaaactgtaaacaggcctccaaatgaatgctgtcttttataagttg 754

                                                                       
Query: 555 ccttagtcatagcaattgtaaattaaataagtaaattagatagttgcttgggaaaatata 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ccttagtcatagcaattgtaaattaaataagtaaattagatagttgcttgggaaaatata 814

                                                                       
Query: 615 aatgggttcatgccttactgcatacacaagagtaaacaaaatccctaagaaatataaaaa 674
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 815 aatgggttcatgctttactgcatacagaagagtaaacaaaatccctaagaaatataaaaa 874

                               
Query: 675 gaaatacacaggtgtcatgc 694
           ||||||||||||||||||||
Sbjct: 875 gaaatacacaggtgtcatgc 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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