BAC Information

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BAC

Clone NameMSMg01-519I10
Chromosome10 (Build37)
Map Location 26,961,896 - 26,962,555
singlet/doubletsinglet
Overlap geneLama2
Upstream geneSamd3, L3mbtl3, LOC435208, LOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519I10.T7 (MSMg01no519_i10.b1)MSMg01-519I10.TJ (MSMg01no519_i10.g1)
ACCAG590778AG590779
length735748
length of high quality
(start - end)
681 (38 - 718)676 (69 - 744)
definitionCHROMAT_FILE: MSMg01no519_i10.b1 PHD_FILE: MSMg01no519_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:16 2005CHROMAT_FILE: MSMg01no519_i10.g1 PHD_FILE: MSMg01no519_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GTTTAGTTCTATACCCCATTTTTTGATTGGGTTGTTTATGTTTTGGTTGT
TAGCTTTTTGAGTTCTTTTTTTTTTTTTTTTTACTTTAAACAAAATGTTA
TTGCACAAAAGTTGTCACATAATTGGATACTTCTCTACTTTGTACACAAT
CATCCCCACCCTCCACTGAAGGCTGCTTCTGAACTTTTCATGTGATGACA
CAGTGCTACAGTCCTGATGCTAACAGAACATCAGTAGAGATGCCTCAGTG
ATTTAAGTTGAAAGCAGGACACTGGTATAATGGCTCTTGCCCCCAGCATC
AGGAATGTACAAATGTCTTTATTCAAAAGTACAAAATACATTATCTGTAG
GCATGGACAATGACATCAGTAAACCATTCTATTTTGTCAAAGGAAACCAG
TAACTGACAGTCACAGTCATCAGCTTTTAATCATTTTCTCCAGGTAACTT
CTCTGAAGTTGTCGGTGAGGAACCTGCCTTGAGTTATTTATATATTTTGA
ATATTAGCCCTATGTCAGATGTGGTGTTGGTAAAGATTTATTCTCCCAAT
CATCTATAGGTTTCTGATTTCTCCTATTAACTATGTCCTTTGCCTTACAG
AAGCTATCCAGCTTCATGAGGTCCCATTTATCAATAATTGATTTTAGAGT
ATTGGATTTCACAATGGAATTCAGTGTGAACATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATTTAGTTTCATTTCTAGCTGGGCAAATCTG
TACCCAGGTTAAAAGAAAACACATTAGTCACGAACATGGCTTTAAGCTCT
GTGTAGTCTCTGGAAGCTTGTATTACTTTAAAGCACATGAGAACCAGCAA
AGTTATGCCTCGAGTGTTTCTACAAATGGCATAAGTAGTGTTGTAGAGGG
GAATATCTCAGAGCACTCAAATGATTCCTTCAAGATACCATCTTAATGAA
ACTTAAACTCTTATTTATCTACAAGCCATTCCTTCCACCTAGAAAAATCA
CACATACACATACACACACACACACACACACACACACACACACACACACA
CACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGATTTCAAGTAAATCAAGTTTCAAACTACCTAAAAGAAAACAGAAT
TAATCTCTTTAGAATTACTCTAAAATGATAAACCAAGTTATTAAGAAACA
TTGCTTTTTAAAATTAGAATTGTAGAACAATAAGACAACAAGATCTTAAG
CTTCACTTTTTTTCTCATGCTCTTTTACTTTCGTACCCTCTTCCCCCTCC
ATCACTTCTCTCCCCATTACCCTCCCTGTCACTCTCTGCACTCTTCTGGT
CAGNCACTACTCCTCTACCCTCTACTCCTCTACTCTCTGTCTCTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_i10.g1 MSMg01no519_i10.g1 CHROMAT_FILE:
MSMg01no519_i10.g1 PHD_FILE: MSMg01no519_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:16 2005
         (676 letters)



>mm_chr10_26961696_26962771
          Length = 1076

 Score = 1193 bits (617), Expect = 0.0
 Identities = 654/676 (96%), Gaps = 16/676 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttagtttcatttctagctgggcaaatctgtacccaggttaaaagaaaacacattagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttagtttcatttctagctgggcaaatctgtacccaggttaaaagaaaacacattagt 260

                                                                       
Query: 61  cacgaacatggctttaagctctgtgtagtctctggaagcttgtattactttaaagcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgaacatggctttaagctctgtgtagtctctggaagcttgtattactttaaagcacat 320

                                                                       
Query: 121 gagaaccagcaaagttatgcctcgagtgtttctacaaatggcataagtagtgttgtagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaccagcaaagttatgcctcgagtgtttctacaaatggcataagtagtgttgtagag 380

                                                                       
Query: 181 gggaatatctcagagcactcaaatgattccttcaagataccatcttaatgaaacttaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaatatctcagagcactcaaatgattccttcaagataccatcttaatgaaacttaaac 440

                                                                       
Query: 241 tcttatttatctacaagccattccttccacctagaaaaatcacacatacacatacacaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||            ||
Sbjct: 441 tcttatttatctacaagccattccttccacctagaaaaatcacaca------------ca 488

                                                                       
Query: 301 cacacacacacacacacacacacacacacacacacacacagagagagagagagagagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cacacacacacacacacacacacacacacacacacacacagagagagagagagagagaga 548

                                                                       
Query: 361 gagagagagagagagagagagagagagatttcaagtaaatcaagtttcaaactacctaaa 420
           ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||
Sbjct: 549 gagagagagagagagagagagaga----tttcaagtaaatcaagtttcaaactacctaaa 604

                                                                       
Query: 421 agaaaacagaattaatctctttagaattactctaaaatgataaaccaagttattaagaaa 480
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 605 agaaaacagaattaatctctttagaattactctaaaatgatataccaagttattaagaaa 664

                                                                       
Query: 481 cattgctttttaaaattagaattgtagaacaataagacaacaagatcttaagcttcactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 cattgctttttaaaattagaattgtagaacaataagacaacaagatcttaagcttcactt 724

                                                                       
Query: 541 tttttctcatgctcttttactttcgtaccctcttccccctccatcacttctctccccatt 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 725 tttttctcatgctcttttacttccgtaccctcttccccctccatcacttctctccccatt 784

                                                                       
Query: 601 accctccctgtcactctctgcactcttctggtcagncactactcctctaccctctactcc 660
           ||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 785 acccttcctgtctctctctgaactcttctggtcagccactactcctctaccctctactcc 844

                           
Query: 661 tctactctctgtctct 676
           ||||||||||||||||
Sbjct: 845 tctactctctgtctct 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)