BAC Information

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BAC

Clone NameMSMg01-519K03
Chromosome10 (Build37)
Map Location 129,669,370 - 129,669,869
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827
Downstream geneNeurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519K03.T7 (MSMg01no519_k03.b1)MSMg01-519K03.TJ (MSMg01no519_k03.g1)
ACCAG590857AG590858
length637724
length of high quality
(start - end)
185 (55 - 239)500 (71 - 570)
definitionCHROMAT_FILE: MSMg01no519_k03.b1 PHD_FILE: MSMg01no519_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:24 2005CHROMAT_FILE: MSMg01no519_k03.g1 PHD_FILE: MSMg01no519_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTGCGGCGCTATACGATCATATCGAGAGGATCCGCGGATTCGTAATA
AGCGTTATCTATTCGTAACATTCAAATTTACTTCTATTAAGAATGTGAAA
CTAATTAGGCATTACAAAGAAGGAGCCAGAATAGCTCAGGCTGGTCTGCA
GTGTTTACTTGGGACAATAGCCAGTCTTACCCAGACAAGGGAATACACAG
TAGCCTAGTGAATAGGTGGGTTCACCATGAAAGAGTTAGNNNNNNNNNNN
NNNNNNNNNNCNNNTNNNNNNNNNTGNNNNNTTNNNCNTNNNTTNTNNNN
NTTTTTTTTTTTTTTTTTCTTCACTTTTTTCTCTCTCTCCTTTTTCTTTA
TTTTTTTTTCTACACTCTTTTTTTTTTTTTTTTTCATTTTTTTTTTCCTC
CCTTTATTTACTTGCCTTATTTGTTTTTTCCCCCTTTGCGTTTCTCCTTT
TTTTGCCCGGTTTTAAAGTATTACCTGCCCCCCCTGATTTTTTCCGACCC
TGGTCTCGAATGTTTTAACTGCCACTTTTTTTGTTTCCGGTTTGTCTTCT
TCTTCTCTTTTTTTTGCAGCTATCATTTATTTGTATACTGTCTTAAAGAG
TTTTTGTTTTTTTCCCCCCTTTTTTCCTTTTTTTTTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCCTCAGTGACTTCTCCCCAAACTGTTGCT
GCAGTTGAGCCATCTGTCAGGCCCCCAGCATCTGTATCCCTTTTTGCAAA
GCTGAGCTCCCAGCAGACTGGGGTCTCAACCCACAGAAATGCTGCAACTA
CAGTGGAATTCTGAAACCAAAGAAGGGACCAAGAAGAAAGAGACTTATTT
TGAAATTCTCAAGGAAAGAAAACCGTATGTATTTGCTCAAGAACCAGATA
AGCAGAATCTATGGAACAGACTCTATGAAATATGCATTTATTATAAAGGG
CTAATCCTTGTCCCCAGTGATCATAAATTATCACCTTCATGAAGGAGCTA
AAGAGAGCTGTCATCAAATATGTTATGGTGTACCAATAAATCTATACTTG
CTGAAGATCATTAAATAAAACCTCTTTAGTTTCACATATGAAAACAAGGA
AATTCAGAGTTGAAAATTAAGGGAATTTTACATACAGTCTGTACTTCACA
TGCATGATTTCTACTATTTAGGTTTAACCAACACAGAATAAAAATAATCA
GAAAAAAATCACATCACCATGAACACCTACAGACTTATTTTTTGTCATTA
TTTGCCAAATAATAAAAGTTTATCAATTATTTGCTTAGCACTTATATTGG
TATAACCTATATATCAGGAGATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_k03.g1 MSMg01no519_k03.g1 CHROMAT_FILE:
MSMg01no519_k03.g1 PHD_FILE: MSMg01no519_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:24 2005
         (500 letters)



>mm_chr10_129669170_129670069
          Length = 900

 Score =  928 bits (480), Expect = 0.0
 Identities = 495/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctcagtgacttctccccaaactgttgctgcagttgagccatctgtcaggcccccagca 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ccctcagtgacttctccccaaactgttgctgcggttgagccatctgtcaggcccccagca 260

                                                                       
Query: 61  tctgtatccctttttgcaaagctgagctcccagcagactggggtctcaacccacagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtatccctttttgcaaagctgagctcccagcagactggggtctcaacccacagaaat 320

                                                                       
Query: 121 gctgcaactacagtggaattctgaaaccaaagaagggaccaagaagaaagagacttattt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgcaacttcagtggaattctgaaaccaaagaagggaccaagaagaaagagacttattt 380

                                                                       
Query: 181 tgaaattctcaaggaaagaaaaccgtatgtatttgctcaagaaccagataagcagaatct 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 tgaaattctcaaggaaagaaaaccgtatgtatttgctcaagagccagataagcagaatct 440

                                                                       
Query: 241 atggaacagactctatgaaatatgcatttattataaagggctaatccttgtccccagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggaacagactctatgaaatatgcatttattataaagggctaatccttgtccccagtga 500

                                                                       
Query: 301 tcataaattatcaccttcatgaaggagctaaagagagctgtcatcaaatatgttatggtg 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatgaattatcaccttcatgaaggagctaaagagagctgtcatcaaatatgttatggtg 560

                                                                       
Query: 361 taccaataaatctatacttgctgaagatcattaaataaaacctctttagtttcacatatg 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 taccaataaatctatacttgctgaagatcattaaataaaacatctttagtttcacatatg 620

                                                                       
Query: 421 aaaacaaggaaattcagagttgaaaattaagggaattttacatacagtctgtacttcaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaacaaggaaattcagagttgaaaattaagggaattttacatacagtctgtacttcaca 680

                               
Query: 481 tgcatgatttctactattta 500
           ||||||||||||||||||||
Sbjct: 681 tgcatgatttctactattta 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)