BAC Information

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BAC

Clone NameMSMg01-520B12
Chromosome10 (Build37)
Map Location 85,552,769 - 85,553,127
singlet/doubletsinglet
Overlap geneSyn3
Upstream geneFhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7
Downstream geneTimp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520B12.T7 (MSMg01no520_b12.b1)MSMg01-520B12.TJ (MSMg01no520_b12.g1)
ACCAG591210AG591211
length747747
length of high quality
(start - end)		689 (51 - 739)481 (78 - 558)
definitionCHROMAT_FILE: MSMg01no520_b12.b1 PHD_FILE: MSMg01no520_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:01 2005CHROMAT_FILE: MSMg01no520_b12.g1 PHD_FILE: MSMg01no520_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACAAGAGACAGACAATATCTCCCTTTTTAGTTATTTCAA
ACATGACATGAACAATCAGTATAGAGATCTAATGACACGCAGTGAGTGCA
GGATGGACAGCAGTGTGTGCTATTAGAGTGTGCAGTTATCTGAGAACAAG
CCCTGAGCTCCAAACCTTTACACAGCAGTGTGCCCCAACATGTGATCACA
AATATATAGGTGCTTTGATTCAAGTCTAGATCACTCCTTAAAAATGTCTC
ACACTGGTTGAGTTCCTCTTGATTCAGGGAACAGGGAAAGCTCTACCTCT
AGTGTACTTACCACCACCTCGACAGGCGTTCCTTAATTCCTCAAACATTA
GTTTTTCCAGAGCATCATTCACATAAAACACTCCTTCAACCTGATACAAA
AGAAAAGCAAAATGCGTTGTCTGAACCCAAGTTTCTCAAGTACACGCCCA
GTGGGCAGAACGTATACACTGCACATAGCGCTTCATTCTGCATGAACGTC
TATACCACACATAGCGCTTCATTCTGCATGAACGTCTATACCACACATAG
CGCTTCATTCTGCATGAACGTCTATACCACACATAGTGCTTCATTCTGCA
TGAAGCTGCCACGTTGCGTCTTTTAAGAGGAAAACTTCCAGTCACAATCT
AAAAGGATCTTAGAGCATTTTAGATCTGGGTTTAAACTGGAAATGTC

NAATTCGATGAAGGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTATTCTTTCTGACACTCAAAT
GATCCGTCTTTGGTTCTAGGAGTCCTTTGTCTGGTAGATTCACGGTCTTG
ATGTGTGCTTCTTCTCTCTTCTCACTATGATGAGGTGTTCCTAGCTCAAC
ACACATTTTCTACCTAAATCCTGGAATCAGCCATCCCTCAAGAAGCCTGG
CTCTCCTTGGGATAAAAGCATTTTTAAGGACCATAATCAAAGTGCTAAGC
ATGTTCTTTGCTATTTTGATGGCCACTTCTTCTAGGTCTTTGGGGGGGGG
GCATAGGAAAAAAACAGATCATAAATCTACACTGACATTTTGAATTCAGA
TTTTAGATAAGAGAGATTTAACTTACTTTGATTTTTTTCAAATTGTATTT
ATTTTGCATTTAGGGCTAGGATATGACTGGGTGGTGTAACACTTGGCAAA
CATGGGAGCAGGAATTAACAGAGGAAGGATGGGGAGAGGAAAGGAGGGAG
GGATAGTAAGAGGGGAGGGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNTNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_b12.g1 MSMg01no520_b12.g1 CHROMAT_FILE:
MSMg01no520_b12.g1 PHD_FILE: MSMg01no520_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:02 2005
         (481 letters)



>mm_chr10_85552247_85553127
          Length = 881

 Score =  652 bits (337), Expect = 0.0
 Identities = 354/361 (98%), Gaps = 4/361 (1%)
 Strand = Plus / Minus

                                                                       
Query: 123 cacacattttctacctaaatcctggaatcagccatccctcaagaagcctggctctccttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 cacacattttctacctaaatcctggaatcagccatccctcaagaagcctggctctccttg 822

                                                                       
Query: 183 ggataaaagcatttttaaggaccataatcaaagtgctaagcatgttctttgctattttga 242
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ggataaaagcatttttgaggaccataatcaaagtgctaagcatgttctttgctattttga 762

                                                                       
Query: 243 tggccacttcttctaggtcttt--ggggggggggcataggaaaaaaacagatcataaatc 300
           ||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||
Sbjct: 761 tggccacttcttctaggtctttggggggggggggcataggaaaaaaac--atcataaatc 704

                                                                       
Query: 301 tacactgacattttgaattcagattttagataagagagatttaacttactttgatttttt 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tacactgacattttgaattcaaattttagataagagagatttaacttactttgatttttt 644

                                                                       
Query: 361 tcaaattgtatttattttgcatttagggctaggatatgactgggtggtgtaacacttggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tcaaattgtatttattttgcatttagggctaggatatgactgggtggtgtaacacttggc 584

                                                                       
Query: 421 aaacatgggagcaggaattaacagaggaaggatggggagaggaaaggagggagggatagt 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aaacatgggagcaggaattgacagaggaaggatggggagaggaaaggagggagggatagt 524

            
Query: 481 a 481
           |
Sbjct: 523 a 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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