BAC Information

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BAC

Clone NameMSMg01-520G21
Chromosome10 (Build37)
Map Location 100,852,510 - 100,853,016
singlet/doubletsinglet
Overlap genenone
Upstream geneEG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520G21.T7 (MSMg01no520_g21.b1)MSMg01-520G21.TJ (MSMg01no520_g21.g1)
ACCAG591463AG591464
length768780
length of high quality
(start - end)
577 (52 - 628)565 (82 - 646)
definitionCHROMAT_FILE: MSMg01no520_g21.b1 PHD_FILE: MSMg01no520_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:28 2005CHROMAT_FILE: MSMg01no520_g21.g1 PHD_FILE: MSMg01no520_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAACTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAATTGAGGGATACCGAACAGCTGAGAAGCACTGGAAA
AATGTTCAACATCCCTGATCATCAGGAAAATGCAAATTTTCTACTGCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCATGTTACAGCAGATGCTAGCA
AGGATGTGGAGAAAGAGGAACACTCTTCCATTGCTAGTGGGATTCCAAGC
TTGTACAACCACTCTGAAAATCACTCTGGTGGTTCTTCAGAAAACTGGAC
ATAGTACTACCTGCAGATCCAGGAATACCTCTCCTGGGCATATATCCAGA
AGATGTTCCAAGTGGTAATAAGGACACATGTTCCACTATGTTCATAGCAG
CCTTGTTTATAATAGCCAGAAGGTGGAAAGAACCCAGATGTCCCTCATCA
GAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTAATACTC
AGCTATTAAAAAACAATGGATTTATGAAATTCTTGGACAAATGGATGTAT
CTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAAGTCATT
TGATATGCACTCACTGATTCTTGGATATTAGCCCAGAAACCTAGAATACC
TGAGATACAATTTGCAAAACACAAGATAATCTAGAAGAAGGAAGACCAAT
GCGTGGATACTTCATTCCTCCATAGAGTANGGAATAAATACCCATGGAAG
TAGTTACAGAGCCCAAGT
AAAAATCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAAAATGTTAAATACC
ACATGTGGCTTTAAGGGAAAAGTTATGTCACGATGGTGTTTGAAATTGAT
GCTTGAAAATGCTATTCAATAATGAATAAAGGGAAAATGGTTGATAATTC
AGATGAGAGAAACTTTGGTGGTTAGAACATTGAGTTTCCTGAATAATCAA
TGCTTTTCTATTATTCACAGAATAATACTTAGTAGGCACTGCCTATTTGT
GTCTAGGATCTGAGAGGTTATTCTGCAAGAAATATCTAGGCCCAGACTTT
ATAACAGATCCCTTTAGCAAGATTTTGTGTAATTCAGTTAGTATGTTTGT
TTAGAAAGTAAGAAGGGCTAGAGTTCACCTACTATACTCCATAGGGAAAA
TAATACACACACACACACACACATACACACACACACACACACACACACAC
ACACACACACACACACACACACGACAGAGAGAGACACACACAGAGAGAGA
GAGAGAGAGAGAGAGAGGAACAGAGAGAGAGAGAGAAACACAGAAATAGA
GGGAGACAGAGAGAACACACAGAAAGACTATACATACAAACACACACATA
CACAAAGAAAATGACAAACACACAGAGACAGGGGAACACAAGGGAGAGAA
AGAATACACACACACACACACACACACACACACACACACACACACGCGCG
CGCGTGTGCGAAAGAAGAGGAGGAAAAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_g21.g1 MSMg01no520_g21.g1 CHROMAT_FILE:
MSMg01no520_g21.g1 PHD_FILE: MSMg01no520_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:29 2005
         (565 letters)



>mm_chr10_100852310_100853274
          Length = 965

 Score =  781 bits (404), Expect = 0.0
 Identities = 490/536 (91%), Gaps = 32/536 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaaaatgttaaataccacatgtggctttaagggaaaagttatgtcacgatggtgttt 60
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaaaatgttaaatgccaaatgtggctttaagggaaaagttatgtcacgatggtgttt 260

                                                                       
Query: 61  gaaattgatgcttgaaaatgctattcaataatgaataaagggaaaatggttgataattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaattgatgcttgaaaatgctattcaataatgaataaagggaaaatggttgataattca 320

                                                                       
Query: 121 gatgagagaaactttggtggttagaacattgagtttcctgaataatcaatgcttttctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgagagaaactttggtggttagaacattgagtttcctgaataatcaatgcttttctat 380

                                                                       
Query: 181 tattcacagaataatacttagtaggcactgcctatttgtgtctaggatctgagaggttat 240
           |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 381 tattcacaaaataatacttagtagacactgcctatttgtgtctaggatctgagaagttat 440

                                                                       
Query: 241 tctgcaagaaatatctaggcccagactttataacagatccctttagcaagattttgtgta 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgcaagaaatatctaggcccagaatttataacagatccctttagcaagattttgtgta 500

                                                                       
Query: 301 attcagttagtatgtttgtttagaaagtaagaagggctagagttcacctactatactcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcagttagtatgtttgtttagaaagtaagaagggctagagttcacctactatactcca 560

                                                                       
Query: 361 tagggaaaataatacacacacacacacacacatacacacacacacacacacacacac-ac 419
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||
Sbjct: 561 tagggaaaataatacacacacacacacacaca--cacacacacacacacacacacatgac 618

                                                                       
Query: 420 acacacacacacacacacacacgacagagagagacacacacagagagagagagagagaga 479
           |                     || ||||||||| | | | |||||||||||||||||||
Sbjct: 619 a---------------------gagagagagagagagagagagagagagagagagagaga 657

                                                                   
Query: 480 gagagaggaacagagagagagagagaaacacagaaatagagggaga--cagagaga 533
           ||||||||  |||||||||||||||||||| |||    ||| ||||  ||||||||
Sbjct: 658 gagagagg--cagagagagagagagaaacagaga----gagagagaagcagagaga 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)