Query= MSMg01no520_o22.b1 MSMg01no520_o22.b1 CHROMAT_FILE:
MSMg01no520_o22.b1 PHD_FILE: MSMg01no520_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:07 2005
(705 letters)
>mm_chr10_44833544_44834649
Length = 1106
Score = 1170 bits (605), Expect = 0.0
Identities = 669/703 (95%), Gaps = 22/703 (3%)
Strand = Plus / Plus
Query: 5 gaattcctaaagtcattgagttctttcatgtatacatgt-ccaagacagtcactgagcct 63
|||||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 205 gaattcctaacgtcatagagttctttcatgtatacattttccaagacagtcactgagcct 264
Query: 64 gtgtgtcaggtatgtcctgaagcaggtgttgtcaggtgagcttttactcattaaaggagc 123
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgtgtcaggcacgtcctgaagcaggtgttgtcaggtgagcttttactcattaaaggagc 324
Query: 124 tcaacagagagccatttacaggatgacagcaaatgctgttaacagttttattggtgacca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaacagagagccatttacaggatgacagcaaatgctgttaacagttttattggtgacca 384
Query: 184 ctgtataccagatcttaggaataaaggactggagagtgctgtaactccactcagtacagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtataccagatcttaggaataaaggactggagagtgctgtaactccactcagtacagc 444
Query: 244 ctttatttgtgtctttaaaatacctgcaagctatgttgtgaagtagcaagcaaacccgta 303
|||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 ctttatttgtatctttaaaatccctgcaagctatgctgtgaagtagcaagcaaacccgta 504
Query: 304 agcacttagctctagtttgagaagaacatggagtgtgagcctggtagaagtggctggcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcacttagctctagtttgagaagaacatggagtgtgagcctggtagaagtggctggcca 564
Query: 364 ttggagagtgggccaggtagaggaaccgcctgtggcttgcctagcacctcagcagaggag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttggagagtgggccaggtagaggaaccgcctgtggcttgcctagcacctcagcagaggag 624
Query: 424 gcaagattttgaatgtgtaaaggtgagaaaggactgttttatggtgtgggaacttaactc 483
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaagattttgaatgtgtgaaggtgagaaaggactgttttatggtgtgggaacttaactc 684
Query: 484 ggagtgtaatgggaaaggcgctggaaggttcaaaggcaccatcgtggaccaggttagtat 543
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggagtgtaatgggaaaggcactggaaggttcaaaggcaccatcgtggaccaggttagtat 744
Query: 544 gttaagacattgtgctgcctggaatagagtataccaagaaaggtcatgggaaaaccaggc 603
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 745 gttaagacattgtgctgcctggaatagagta--------------------aaaccaggc 784
Query: 604 agagagctgatgctataggccagggctgctgagacttggagctagctactgacttttgag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 agagagctgatgctataggccagggctgctgagacttggagctagctactgacttttgag 844
Query: 664 tgggctgctgctttgccattttg-tagcatctctgacctctgc 705
|||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 845 tgggctgctgctttgccaatttcatagcatctctgacctctgc 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1106
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1096
Effective search space: 761720
Effective search space used: 761720
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_o22.g1 MSMg01no520_o22.g1 CHROMAT_FILE:
MSMg01no520_o22.g1 PHD_FILE: MSMg01no520_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:07 2005
(652 letters)
>mm_chr10_44980422_44981473
Length = 1052
Score = 1183 bits (612), Expect = 0.0
Identities = 639/648 (98%)
Strand = Plus / Minus
Query: 1 taaacatttggaatgccaaacaagggttttcccagcaagaacattaaatacaaatttccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 taaacatttggaatgccaaacaagggttttcccagcaagaacattaaatacaaatttccc 789
Query: 61 cctcaatgaaagattcccttttcttggcacttaaccatttctttgagttgatgtgcattg 120
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 788 cctcaatgaaagattcccttctcttagcacttaaccatttctttgagttgatgtgcattg 729
Query: 121 ctggttggagaccttagaagccaaccccaagacagagattggaaagcagggctttcatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ctggttggagaccttagaagccaaccccaagacagagattggaaagcagggctttcatta 669
Query: 181 ggtcatgcttgaacaaaatccaatagaagggaagaaagtggagaggagctgaaggaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ggtcatgcttgaacaaaatccaatagaagggaagaaagtggagaggagctgaaggaaaga 609
Query: 241 ttcagtacatggcatagagagctagcatgtatggaaagttgtgggtcctccacccaatca 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 608 ttcagtacatggcatagagagctagcatgtatggaaagttgtgggtcctgcacccaatca 549
Query: 301 actattgggtattggcagtctaaggatatggaggagttggggaatagggtctctaacagc 360
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 548 actattgggtattggcagtctaaggatatggaggagctggggaacagggtctctaacaga 489
Query: 361 gtttagaatggtgggtataaacaaccctggagattgcgtcagaggacagctcatttgttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gtttagaatggtgggtataaacaaccctggagattgcgtcagaggacagctcatttgttg 429
Query: 421 aaatagtagggctagtttatatagctcaaattggtgtggggactgaggggtaggacatag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaatagtagggctagtttatatagctcaaattggtgtggggactgaggggtaggacatag 369
Query: 481 gaggaagtgctgcaacaggggtcggtacctgtcaaaactatcagctaggatagcagattg 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 368 gaggaagtgctgcaacaggggtcggtacctgtcaaaaatatcagctaggatagcagattg 309
Query: 541 ctgatcatgtggtttctgagaagccagttctctggtggggaaacagaagcctaaccagct 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctgatcatgtgatttctgagaagccagttctctggtggggaaacagaagcctaaccagct 249
Query: 601 ttgtcatgctggggcctttgtctctatggagttgagtttggataggga 648
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 248 ttgtcatgctgggacctttgtctctatggagttgagtttggataggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
