BAC Information

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BAC

Clone NameMSMg01-521E17
Chromosome10 (Build37)
Map Location 47,756,541 - 47,757,145
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252, LOC100042387, LOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521E17.T7 (MSMg01no521_e17.b1)MSMg01-521E17.TJ (MSMg01no521_e17.g1)
ACCAG592123AG592124
length752759
length of high quality
(start - end)
647 (45 - 691)604 (82 - 685)
definitionCHROMAT_FILE: MSMg01no521_e17.b1 PHD_FILE: MSMg01no521_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:35 2005CHROMAT_FILE: MSMg01no521_e17.g1 PHD_FILE: MSMg01no521_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCG
GAATTCTCACCTGATTGATACCGAATGGCAGAGAAGCACCTGANAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGTAAATCAAAATAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACTGGTAAGGAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAAT
TGCCTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTATCCA
AATGGATGGACCTGGAGGGTATCATCCTGAGTCAGGTAACACATTCACAA
AGGAACTCACCCAATATGTACTCACTGATAAGTGGATATTAGCCCAAAAC
CTAGGATACCCAAGATATAAGATACAATTTGTTAAACACTTGAAACTCAA
GAAAAATTAAGACTGAAATGTGGACACTATGCCCCTCCTTATAAGTGGGA
AC
NNNNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAAACAGAACTACAATG
GGTGAGACTCTAAGATTAATAATTGATAAATTAGTAGTCATGAAACTGAC
AACCTTCTGTAAAGCAAATGACAAAGTCAATAGGACAAATCAGAAAACCA
TACATTGGGAAATAATCTTCATTAACCCCATATCTGTGAGCTAATATCCA
AAATATATAAAGAACTCAAGAAGCTAACCTCCAAACAACCAAACAACACA
ATCAAACAATGGGGTATAGAACTAAACAGAGCATTCGCAACAGAGGATAG
TTGAATGGCTGAGAAGTACATTTGCTTGTTAAAAGAAGAGTCTTGAATAA
TTTTCAACTTGAATAAATGTGGAAAAGTCCAAATACAAAGTAATCTTTAG
TTTAAATTTAACTTAATAGAACAATACCATAAAAGGAAAACAAACAAAAA
TCACAAAATCTTTGCTCCAATATTTACTTTTGTATTGGTTCATATTCATT
GCACATAGTGATGGCTTTCATAAACAAAAACCCTTTCTTTCAGGAAAAGG
TAGTTCTCATGTCTTTTATCTCAGCCACTTGACTCTACTTTTAAAGCTCC
TTTACAGCACTAATCTGGACTTTTCACTATACACACATCCAGTTTTGGGA
GCTGTGTAAAATGGTATATTGAAAAGGGAGAGACCCTGAGTATATTTGTT
TTTCTGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_e17.g1 MSMg01no521_e17.g1 CHROMAT_FILE:
MSMg01no521_e17.g1 PHD_FILE: MSMg01no521_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:35 2005
         (604 letters)



>mm_chr10_47756342_47757345
          Length = 1004

 Score = 1123 bits (581), Expect = 0.0
 Identities = 599/605 (99%), Gaps = 1/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaacagaactacaatgggtgagactctaagattaataattgataaattagtagtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cataaacagaactacaatgggtgagactctaagattaataattgataaattagtagtcat 259

                                                                       
Query: 61  gaaactgacaaccttctgtaaagcaaatgacaaagtcaataggacaaatcagaaaa-cca 119
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 260 gaaactgacaaccttctgtaaagcaaataacaaagtcaataggacaaatcagaaaaacca 319

                                                                       
Query: 120 tacattgggaaataatcttcattaaccccatatctgtgagctaatatccaaaatatataa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tacattgggaaataatcttcattaaccccatatctgtgagctaatatccaaaatatataa 379

                                                                       
Query: 180 agaactcaagaagctaacctccaaacaaccaaacaacacaatcaaacaatggggtataga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaactcaagaagctaacctccaaacaaccaaacaacacaatcaaacaatggggtataga 439

                                                                       
Query: 240 actaaacagagcattcgcaacagaggatagttgaatggctgagaagtacatttgcttgtt 299
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 actaaacagagcattcgcaacagaggatacttgaatggctgagaagtacatttgcttgtt 499

                                                                       
Query: 300 aaaagaagagtcttgaataattttcaacttgaataaatgtggaaaagtccaaatacaaag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaaagaagagtcttgaataattttcaacttgaataaatgtggaaaagtccaaatacaaag 559

                                                                       
Query: 360 taatctttagtttaaatttaacttaatagaacaataccataaaaggaaaacaaacaaaaa 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 560 taatctttagtttaaatttaacttaatagaacaataccataaaaggaaaacaaacaaaga 619

                                                                       
Query: 420 tcacaaaatctttgctccaatatttacttttgtattggttcatattcattgcacatagtg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcacaaaatctttgctccaatatttacttttgtattggttcatattcattgcacatagtg 679

                                                                       
Query: 480 atggctttcataaacaaaaaccctttctttcaggaaaaggtagttctcatgtcttttatc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 atggctttcataaacaaaaaccctttctttcaggaaaaggtagttctcatgccttttatc 739

                                                                       
Query: 540 tcagccacttgactctacttttaaagctcctttacagcactaatctggacttttcactat 599
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcagtcacttgactctacttttaaagctcctttacagcactaatctggacttttcactat 799

                
Query: 600 acaca 604
           |||||
Sbjct: 800 acaca 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)