BAC Information

Click to search

BAC

Clone NameMSMg01-521G16
Chromosome10 (Build37)
Map Location 129,202,440 - 129,202,919
singlet/doubletsinglet
Overlap genenone
Upstream geneWibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807
Downstream geneOlfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521G16.T7 (MSMg01no521_g16.b1)MSMg01-521G16.TJ (MSMg01no521_g16.g1)
ACCAG592217AG592218
length760749
length of high quality
(start - end)		691 (47 - 737)477 (183 - 659)
definitionCHROMAT_FILE: MSMg01no521_g16.b1 PHD_FILE: MSMg01no521_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:45 2005CHROMAT_FILE: MSMg01no521_g16.g1 PHD_FILE: MSMg01no521_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTTTAGTTCTAAACCCCATTTTTTGATCGTGCTATTTGATT
TCTTGGTAGTTAGCTTCCCGATTTCTTTGTATATTTTAGATGTTAGCCCT
ATCCAATGTGGGGATGGTGAAGATTTTTTTCCCAATTTATAAGTTGTTGA
TTTGCCTTATGGACTATGTCCTTTGCCTTACAGAAGCTTTCTAGTTTCAT
GAGGTCTTTATTCACATTTCAAATGTTATCCCCTTTCCTGGTTTCCCCAC
TGAAAATCCCCTATCCACTCTCCCCTTCCCCTGCTCACCAACACACCCAC
TCTGGCTTCCCAGTCCTGGCATTCCTCTACACTAGGGCATTGAGCCTTCA
GAGCATCAAGGGCATCTCCTCCCACTGATGACCGACAAGGCCATCCTCTC
TTCCATTGGTGACCCTGTTCTCAGTCCAATAGTTGTCTGAGAGCATCCAC
CTCTGTATTTGTCAGGCTCTGGCAGAGCCTCTCAGGAGTCAGCTATATCA
TGCTCCTGTCAGCAAGCACTTCTTGGCTTCCACAATAGTGTCTCGGTTTG
GTGACTATATGGGATGGCATATCCCTAGGTGGGACAGTCTCTGGATTGCC
TTTCCTTCAGTCTCTGCTCCATAGNTTGTTTCTATATCTTCCTTCAATTG
GCATTTTGTTCCCCCTTCTTTTATTATTTATTTAAATTTATTTTATTTTA
GTTTAGTTTA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACATCTTCTAGTACCTAATGGTTCTCA
AAGGAATTTGATGAAAATGTTGCCCAAATTAATTAATTGTAGACACACTA
GTTTTTTCTTTCTCTAGGGATGTGTCTATTATGTTTTCCACCAGGACAAA
CTCTTCTAAATCTTATTCACAAACATACATAATGCATCTATTCTTTTTAC
AGAACATTTTTTAAAATATATGAATTGCTGAACAATATTACAAAAGTTAT
TCAGTCAATGGCATATGATGTTTCGATATTTCTTATTCTTAAAGATCAGG
ATTTGGATTGAGAACTGGATAGGCTTTCACAAGCTACACCTAGAAAAAAT
GCTTACATTTTGTTAAAGGAGTTGCTGAATAGAAATACTTAGTTTGGTCA
AATTATTTTAAAAAATGAAACCTTTTCCTACTTGAATCATTGTTGTTTTT
TAAAATAAATATTAGATAATCAGAAAACCAGGTATAAAAATGCCAAGACA
AATATAAAAGTAAGTATATTTTGTCTTTGTCAACAATATTGCTCAACTTT
CTATATTAGAACGGTTTACAATAAATCCTTTTAATACATATCATGAGGCT
ATTTTGTTAAATTGTGTAACTGTTTTTTCTTTCTATGTCTTCCCTAAACC
TGACAACTGAGTTTAAAAATGTATAACACTGACCACAGAAAGGAGTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_g16.g1 MSMg01no521_g16.g1 CHROMAT_FILE:
MSMg01no521_g16.g1 PHD_FILE: MSMg01no521_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:45 2005
         (477 letters)



>mm_chr10_129202240_129203119
          Length = 880

 Score =  874 bits (452), Expect = 0.0
 Identities = 472/480 (98%), Gaps = 3/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttttccaccaggacaaactcttctaaatcttattcacaaacatacataatgcatctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttttccaccaggacaaactcttctaaatcttattcacaaacatacataatgcatctatt 260

                                                                       
Query: 61  ctttttacagaacattttttaaaatatatgaattgctgaacaatattacaaaagttattc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttttacagaacatttttaaaaatatatgaattgctgaacaatattacaaaagttattc 320

                                                                       
Query: 121 agtcaatggcatatgatgtttcgatatttcttattcttaaagatcaggatttggattgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaatggcatatgatgtttcgatatttcttattcttaaagatcaggatttggattgag 380

                                                                       
Query: 181 aactggataggctttcacaagctacacctagaaaaaatgcttacattttgttaaaggagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactggataggctttcacaagctacacctagaaaaaatgcttacattttgttaaaggagt 440

                                                                       
Query: 241 tgctgaatagaaatacttagtttggtcaaattattttaaaaaatgaaac---cttttcct 297
           ||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||
Sbjct: 441 tgctgaatagaaatacttaatttggtcaaattattttaaaaaatgaaacaaccttttcct 500

                                                                       
Query: 298 acttgaatcattgttgttttttaaaataaatattagataatcagaaaaccaggtataaaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttgaatcattgttgttttttaaaataaatattagataatcagaaaaccaggtataaaa 560

                                                                       
Query: 358 atgccaagacaaatataaaagtaagtatattttgtctttgtcaacaatattgctcaactt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 atgccaagacaaatataaaagtaagtatattttgtctttgtcaacaatattactcaactt 620

                                                                       
Query: 418 tctatattagaacggtttacaataaatccttttaatacatatcatgaggctattttgtta 477
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tctatattagaatggtttacaataaatccttttgatacatatcatgaggctattttgtta 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 880
Length adjustment: 10
Effective length of query: 467
Effective length of database: 870
Effective search space:   406290
Effective search space used:   406290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |