BAC Information

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BAC

Clone NameMSMg01-521H14
Chromosome10 (Build37)
Map Location 34,785,216 - 34,785,865
singlet/doubletsinglet
Overlap genenone
Upstream geneBB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
Downstream geneLOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521H14.T7 (MSMg01no521_h14.b1)MSMg01-521H14.TJ (MSMg01no521_h14.g1)
ACCAG592261AG592262
length738732
length of high quality
(start - end)
684 (52 - 735)651 (82 - 732)
definitionCHROMAT_FILE: MSMg01no521_h14.b1 PHD_FILE: MSMg01no521_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:49 2005CHROMAT_FILE: MSMg01no521_h14.g1 PHD_FILE: MSMg01no521_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTGCTTTTACTACCTCACTAGTACTACATTGAATAAAG
GTACCACATGTTCTGTATCCATTCCATTATTGAGGGATATTTGGGTTCTT
TCCAGCTTCTGGCTATTATAAACAAGGTTGCTATGAACATAGTGAAGCAT
GAGTCCTTACTACAGGTTGAAGCATATTCTGGGTATATGCCCAGAAGTAG
TATTGCTGGGTCGACAGGTAGTACTATGTCCAATTTTCATATGAACCGCC
AAACTGATTTGCTGAGTAGTTGTACCAGTTTGCAATCCCACCAGCAAGGG
AGGAGTGTTCCTCTTTCTCCACATCCTTACCAGCATCTGCTGTCACCTGA
GTTTTTAATCTTACTAGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTG
CATTTCCCTGATGACTAAGGATGTTGAACATTTTTTTAGGTGCTTCTCAA
CCATTTGGTATTCCTCAGTTGATAATTCTTTGTTTAGTTTTGTACCCCAT
TTTTAAATAGAGTTATTTGGTTTTCTGGAGTCTTACTTCATGAGTTCTTT
GTATATATTGGATATTAGCCCTCTATCTTTTCCCAATCTGTTGGTTACTG
TTTTGTCTTATAAACAAGTGTCCTTTGCCTTACAGCAGCTTTATAATTTT
ATGAGTTCCCAAGTGTCAATTCTTGATCTTACAACACN
NNCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTAACTCCAGTTGAACT
ACTAAGAAAGCCTGGAGAAGAAAATGAGAGATTACCACTTGAGGGGGAAT
TGCCCTGCAGAATAGGAAAGTGGTGTATTGTGTTTTGTGGGGTGGCCCAT
GATAACAAGCAATGAATAGTCAGTTGAAGAGCTTAATAAAACTGAATCTT
GAAGCAAAGGAGTACATGCATTTCATGCTCCTGTGGTATTTTGGTAGACT
TCACTCTGAATTTATTTTTGGTTCTGCTTTTCTGTTTAGTTGACAGTAGT
TATGGTTAACTTTACGCATCAAATTGATGGGGGTGGGGCACAATGCCTAG
AAATAGATCTAAATATTACTTTGGATGTTTTACTTGAGTGAGTTTCACAT
TTACACCTTTTAGACCATGTCTTCTAAACTATAGGAGGGACTTATCTAAA
CAGGAGAGTACTTGAAGAGAACATAGAACATCATCTCTAGCAGAAAGCCA
TTCGGTAAAGATGGTGCTTTAGATGTGGATTCTAACATCTGCTCATCCTG
GCTAGCCAGAGATATTTGTATTTGCCAGCCTCCATAACTTTTTGAACCAG
CCCATGAATCAATGCATATAACACTCACAAATATATGCACATGCAAAGAA
ATTCTATACTATTTTTCATATTGCTGTGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_h14.g1 MSMg01no521_h14.g1 CHROMAT_FILE:
MSMg01no521_h14.g1 PHD_FILE: MSMg01no521_h14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:49 2005
         (651 letters)



>mm_chr10_34785016_34786066
          Length = 1051

 Score = 1241 bits (642), Expect = 0.0
 Identities = 648/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactaactccagttgaactactaagaaagcctggagaagaaaatgagagattaccacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactaactccagttgaactactaagaaagcctggagaagaaaatgagagattaccacttg 260

                                                                       
Query: 61  agggggaattgccctgcagaataggaaagtggtgtattgtgttttgtggggtggcccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggggaattgccctgcagaataggaaagtggtgtattgtgttttgtggggtggcccatg 320

                                                                       
Query: 121 ataacaagcaatgaatagtcagttgaagagcttaataaaactgaatcttgaagcaaagga 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ataacaagcaatgaatagtcagttgaagagattaataaaactgaatcttgaagcaaagga 380

                                                                       
Query: 181 gtacatgcatttcatgctcctgtggtattttggtagacttcactctgaatttatttttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtacatgcatttcatgctcctgtggtattttggtagacttcactctgaatttatttttgg 440

                                                                       
Query: 241 ttctgcttttctgtttagttgacagtagttatggttaactttacgcatcaaattgatggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgcttttctgtttagttgacagtagttatggttaactttacgcatcaaattgatggg 500

                                                                       
Query: 301 ggtggggcacaatgcctagaaatagatctaaatattactttggatgttttacttgagtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtggggcacaatgcctagaaatagatctaaatattactttggatgttttacttgagtga 560

                                                                       
Query: 361 gtttcacatttacaccttttagaccatgtcttctaaactataggagggacttatctaaac 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gtttcacatttacaccttttagaccatgtcttctaaactgtaggagggacttatctaaac 620

                                                                       
Query: 421 aggagagtacttgaagagaacatagaacatcatctctagcagaaagccattcggtaaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggagagtacttgaagagaacatagaacatcatctctagcagaaagccattcggtaaaga 680

                                                                       
Query: 481 tggtgctttagatgtggattctaacatctgctcatcctggctagccagagatatttgtat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggtgctttagatgtggattctaacatctgctcatcctggctagccagagatatttgtat 740

                                                                       
Query: 541 ttgccagcctccataactttttgaaccagcccatgaatcaatgcatataacactcacaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgccagcctccataactttttgaaccagcccatgaatcaatgcatataacactcacaaa 800

                                                             
Query: 601 tatatgcacatgcaaagaaattctatactatttttcatattgctgtgaaa 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatatgcacatgcaaagaaattctatactatttttcatattgctgtgaaa 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)