BAC Information

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BAC

Clone NameMSMg01-522H13
Chromosome10 (Build37)
Map Location 45,267,017 - 45,267,679
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps
Downstream geneLOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522H13.T7 (MSMg01no522_h13.b1)MSMg01-522H13.TJ (MSMg01no522_h13.g1)
ACCAG593020AG593021
length747739
length of high quality
(start - end)
670 (53 - 722)654 (83 - 736)
definitionCHROMAT_FILE: MSMg01no522_h13.b1 PHD_FILE: MSMg01no522_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:04 2005CHROMAT_FILE: MSMg01no522_h13.g1 PHD_FILE: MSMg01no522_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGACTTTTGCTGCCTCCTGAGTTTAACCACAGCTTGAA
AGAAAGCAATAAATACAGATATAACTTTGAGGTCATTTTCCTCAAAGTTT
TTTTTCCAGTTCTTTTTGTTTATTAAAAATGTTGGATTTATTATTTATTT
ATTTTTTTATGTATGGGTGGTTTGCCTGCATGTATGTCTTTTTGTGCATC
AAATCCATGTCTGTGTCTACAGAGGCCAGAGGAAGGCGTCAGATTCTTTG
GAAATTGAGTTAGAAATAGACATGAGCTGCCATGTGGATGCTGGGAACTG
AACCTTGCTTGGTCCTTTATAAGAACAACATCCAGTTTTCTTAACCACTT
TCCAGCCCCGAATTAGCAAAATCTACACACTAAAAATTCCTGCAGAGATC
AGAACAGGGTGTGCAGCCCTCTAGGATTGGAGTTTCAAACAAACAGTAGC
CACTGTGTGGGTGCTGGAAACTGAATCCATGTCCTTTGCCAGAGGAGCCA
GTGCTCTTAACCACTGAGCCATCTCTCCAGCTTTTGCAGAGAATTTTAAA
AAAGATGTAGCTTATTATTTTTAAAATTATGTTTAGGTGTATGTGTGTGA
TCATGTGGGCATATGGGCAACAACCAGCTGGAGTTACATCTGCTTGTTAG
CTTCTATGTGGGTACTGGGAATCAAACCTGTGTCCTCTGCTACAGCN
TTTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGGACAGCCGGATCC
TTCAACGGCAAAGCTTTTATTGCTTCAACATAAGGAAGACCCCGAACCCG
GAAAATGACGCTGCTTATATAGTCCGTAGCGTGACGTTTCAGCACCTGAT
TAGTTGCTCGCCCATCACCCCATTACTACGCCCCGAGATGGGCAGTGACT
GGGTGTGAATTCACTCTTGCACTTGCGAATAAGGCTTGTTTACTAGTTAG
GCGCAGTGGAAGCCAGCGCCATCTTATAATGGCAATTGCTCACAGCACAG
CTCTCCACAGATGGATCTTGAGGTAGATTCCTTCATGAGGAACCACCATA
CTGATTACCATAATAGCTATACAAGTTAGCACTCCCACCAGCAATATGTG
TTTCTTTTACCTCACATCCACACCAGTGTGAGCTGTTACTTGTTTTGTTG
ATCTTAGATATTAGGGGTGCAAAATGAAATCTCAAAGTAGTTTTGATTTG
CATTTCCCTGATGGCTAAGGATGTTGGACATTTTAAGTGTTTCGCATCCA
TTTGCATATTTTCTTTAGATGTGTACCCAATTGTTTAATTGGGTTATCTG
TTTTCTTGATATCTACTTTCTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTTGTATTTTGGATAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_h13.b1 MSMg01no522_h13.b1 CHROMAT_FILE:
MSMg01no522_h13.b1 PHD_FILE: MSMg01no522_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:04 2005
         (670 letters)



>mm_chr10_45266813_45267881
          Length = 1069

 Score = 1145 bits (592), Expect = 0.0
 Identities = 647/668 (96%), Gaps = 7/668 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagacttttgctgcctcctgagtttaaccacagcttgaaagaaagcaataaatac 64
           |||||||| ||  |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcagcctgctgctgcctcctgagtttaaccacagcttgaaagaaagcaatatatac 264

                                                                       
Query: 65  agatataactttgaggtcattttcctcaaagttttttttccagttctttttgtttattaa 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 agatataactttgaggtcattttcctcaaagtttttttt-cagttctttttgtttattaa 323

                                                                       
Query: 125 aaatgttggatttattatttatttatttttttatgtatgggtggtttgcctgcatgtatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatgttggatttattatttatttatttttttatgtatgggtggtttgcctgcatgtatg 383

                                                                       
Query: 185 tctttttgtgcatcaaatccatgtctgtgtct--acagaggccagaggaaggcgtcagat 242
           |||||||||||| |||||||||||||||||||   | ||||||||||||||| |||||||
Sbjct: 384 tctttttgtgcaccaaatccatgtctgtgtcttctctgaggccagaggaaggtgtcagat 443

                                                                       
Query: 243 tctttggaaattgagttagaaatagacatgagctgccatgtggatgctgggaactgaacc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 444 tctttggaaattgagttagaaatagacatgagctgccatgtggatgctgggaactgaac- 502

                                                                       
Query: 303 ttgcttggtcctttataagaacaacatccagttttcttaaccactttccagccccgaatt 362
              |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 503 ---cttggtcctttacaagaacaacatccagttttcttaaccactttccagccccgagtt 559

                                                                       
Query: 363 agcaaaatctacacactaaaaattcctgcagagatcagaacagggtgtgcagccctctag 422
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 agcaaaatctacacactaaaaattcctgcagagatcataacagggtgtgcagccctctag 619

                                                                       
Query: 423 gattggagtttcaaacaaacagtagccactgtgtgggtgctggaaactgaatccatgtcc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gattggagtttcaaacaaacagtagccactgtgtgggtgctggaaactgaatccatgtcc 679

                                                                       
Query: 483 tttgccagaggagccagtgctcttaaccactgagccatctctccagcttttgcagagaat 542
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 680 tttgccagaggagccagtgctctttaccactgagccatctctccagcttttgcagagaat 739

                                                                       
Query: 543 tttaaaaaagatgtagcttattatttttaaaattatgtttaggtgtatgtgtgtgatcat 602
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 740 ttttaaaaagatgtagcttattatttttaaaattatgtttaggtgtatgtgtgtgttcat 799

                                                                       
Query: 603 gtgggcatatgggcaacaaccagctggagttacatctgcttgttagcttctatgtgggta 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gtgggcatatgggcaacaaccagctggagttacatctgcttgttagcttctatgtgggta 859

                   
Query: 663 ctgggaat 670
           ||||||||
Sbjct: 860 ctgggaat 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space:   698940
Effective search space used:   698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)