BAC Information

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BAC

Clone NameMSMg01-522M02
Chromosome10 (Build37)
Map Location 71,669,913 - 71,670,579
singlet/doubletsinglet
Overlap genenone
Upstream geneTfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik
Downstream geneLOC100040505, Zwint, LOC432471, LOC544705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522M02.T7 (MSMg01no522_m02.b1)MSMg01-522M02.TJ (MSMg01no522_m02.g1)
ACCAG593238AG593239
length749754
length of high quality
(start - end)
685 (53 - 737)667 (82 - 748)
definitionCHROMAT_FILE: MSMg01no522_m02.b1 PHD_FILE: MSMg01no522_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:26 2005CHROMAT_FILE: MSMg01no522_m02.g1 PHD_FILE: MSMg01no522_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAATCAGAAATGGAAAAGGAAGTTTATAACAGAGAATG
TTGGTTTTTTTACATGCATGTTCATTAGCAGTAATTATCTGACTAAACAT
TCATCACCTGTCACAGCGCCACAGGTTCATGGAGAATTAAGAACCATAAC
TAAGTTATTAGTGAAGTTTTGTATAGATAAAAATCAGGCAATATTTTATC
TTCTGTCCAAGCACCTATAATAAATCATTATAATAAATCATTTTATGACC
CTTGGTTAATAGTTTTAGAACTTTTGGAATGTTCTCTCAGTAGTAGAATG
CCTGCTACTATCTCAGGAGTGACACAAAAGACTGGCAGGGTTCTCATTAG
AATTTTGACTATCAGAAAGGACCTAATAGCAGTCCTTCTATAAAAGAACT
TAATAAATACTGATATAGTTTTAGGAATTCTTATAGGATCATCATTAAGA
ATTAAGAAGTCATCTATTTGTCTACAAATCATCACTACAAGACAGTACAT
CTTTGTAGTTCTTCAGAGATCTGCTCAAAGGGGTGGGCTAATGCCTCGTG
ATTGTTATATAATATATAATAATAACAGAAAAAGCATATTAATAGCAGCA
ATTTTCCAAAATTGAATTTCTCCTGGGCCTTGACAATAGATAGGAGCAAG
TATGTTGGATTATTAAACCAAGGCAGTCTCATCTCANGAAGATCACCTN
GGGTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCTTATACAGATAAATA
ATCACTTTCAGGCATCTAGACATGCTCATGTTGTTAATGAAATGTGAATC
CTGATGTCTGATCAGCATCTAAGGGAGCTTTCATGGGCCCTGGTGATTTA
TAGGATCCTTATTGACCTGATTGTTATCTTCATGGCCATAGTCAGCAGTT
GTACCAGGAAAAGAATGAAATGGTTCATTTGCTACCTAGGTGAATATTGC
CAAGAGGCCTTGCTTGAAATTAATACTTTAAATTATTGTAGGGCCAAGGA
ATAATTTAAAATTACAAGCAAATACTGGGAATATTATGTTCAATTAGCTT
TTGATTTTCCAAAATAATACATACATTACTGAAGGGTTCAAAAATACATC
TCAATAAATTAAACATAGGGAAGTTGTAAATCAAGCATAACCCTCACATT
CCTATTCCTCTTTGATGAGGATGAGAAGTGCCGCATCAACAGTCTATGAC
TATTCATTTTGGAAACACAAAGCATGAAGTCACAGAATTTGTTGAAACTT
TATCTGAGGAATGATTTCAGTTTGTGGAGTTAATGGTCACTGTAGTCTGC
TGTGGTTTGGGGAGGGGTGGCTTAACCCATGATCTCTGGATTGTATAAGT
ACTTGACTTTTGAGCAGGTGACATGCACAAAGTAAGAATTTGAGAATAAC
AGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_m02.g1 MSMg01no522_m02.g1 CHROMAT_FILE:
MSMg01no522_m02.g1 PHD_FILE: MSMg01no522_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:27 2005
         (667 letters)



>mm_chr10_71669713_71670779
          Length = 1067

 Score = 1259 bits (651), Expect = 0.0
 Identities = 663/667 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcttatacagataaataatcactttcaggcatctagacatgctcatgttgttaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tatcttatacagataaataatcactttcaggcatctagacatgctcatgttgttaatgaa 808

                                                                       
Query: 61  atgtgaatcctgatgtctgatcagcatctaagggagctttcatgggccctggtgatttat 120
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 807 atgtgaatcctgatgtctgatcaacatctaaaggagctttcatgggccctggtgatttat 748

                                                                       
Query: 121 aggatccttattgacctgattgttatcttcatggccatagtcagcagttgtaccaggaaa 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aggatccttactgacctgattgttatcttcatggccatagtcagcagttgtaccaggaaa 688

                                                                       
Query: 181 agaatgaaatggttcatttgctacctaggtgaatattgccaagaggccttgcttgaaatt 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agaatgaaatggtccatttgctacctaggtgaatattgccaagaggccttgcttgaaatt 628

                                                                       
Query: 241 aatactttaaattattgtagggccaaggaataatttaaaattacaagcaaatactgggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aatactttaaattattgtagggccaaggaataatttaaaattacaagcaaatactgggaa 568

                                                                       
Query: 301 tattatgttcaattagcttttgattttccaaaataatacatacattactgaagggttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tattatgttcaattagcttttgattttccaaaataatacatacattactgaagggttcaa 508

                                                                       
Query: 361 aaatacatctcaataaattaaacatagggaagttgtaaatcaagcataaccctcacattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaatacatctcaataaattaaacatagggaagttgtaaatcaagcataaccctcacattc 448

                                                                       
Query: 421 ctattcctctttgatgaggatgagaagtgccgcatcaacagtctatgactattcattttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctattcctctttgatgaggatgagaagtgccgcatcaacagtctatgactattcattttg 388

                                                                       
Query: 481 gaaacacaaagcatgaagtcacagaatttgttgaaactttatctgaggaatgatttcagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaaacacaaagcatgaagtcacagaatttgttgaaactttatctgaggaatgatttcagt 328

                                                                       
Query: 541 ttgtggagttaatggtcactgtagtctgctgtggtttggggaggggtggcttaacccatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgtggagttaatggtcactgtagtctgctgtggtttggggaggggtggcttaacccatg 268

                                                                       
Query: 601 atctctggattgtataagtacttgacttttgagcaggtgacatgcacaaagtaagaattt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atctctggattgtataagtacttgacttttgagcaggtgacatgcacaaagtaagaattt 208

                  
Query: 661 gagaata 667
           |||||||
Sbjct: 207 gagaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)