BAC Information

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BAC

Clone NameMSMg01-522N05
Chromosome10 (Build37)
Map Location 111,910,813 - 112,110,781
singlet/doubletdoublet
Overlap genenone
Upstream geneNap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
Downstream geneLOC100042639, 4921506J03Rik, LOC100042655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522N05.T7 (MSMg01no522_n05.b1)MSMg01-522N05.TJ (MSMg01no522_n05.g1)
ACCAG593291AG593292
length755769
length of high quality
(start - end)		624 (48 - 671)598 (80 - 677)
definitionCHROMAT_FILE: MSMg01no522_n05.b1 PHD_FILE: MSMg01no522_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:32 2005CHROMAT_FILE: MSMg01no522_n05.g1 PHD_FILE: MSMg01no522_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(112,110,307 - 112,110,781)(111,910,813 - 111,911,407)
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGCTCTCTTTACTTGATATCATTAACTGCTTTTATACCAAA
TACTCTTTGCTCTTTAGTTATTGTAGTATTATAATAATAACTGAAATAAG
TTGTAGCATCTTCAAGGCACAGTCTTGTTTTCAAAAGATTTTCTGATGGA
ACTGAAGAGATGGCTTTGTAGTTAAGAGTAATGTCTGTTCTTTCAAGGGC
ACAGATTCAATTCCTAGAATTCACATGGTGGCTCATAACTATAATTCCTG
GTGATCCACTGTCTTTTTCTGGCATCAGCAGGCTCGGTGCTATGTGCTGC
AAGACTTAGATGCAGTCACGCATACACATAAAATAAAAATGAATGGACCT
TGTAAAATAGGAGGGTTTAAATATTTTAAAAGGGAAGAAAGATATTTTTA
GATTTCATATTTATATTACTTCTATAGCTAGAATGTAGCAAACAAAATTA
ATGACTGGGACTTGGTAAGACATGACAAATGAAGCAATAATGGCATAAAT
AGTATGGAAATAACTGACTGCTTCCACTTTGGATTGAAGTTCCATTCTAC
AAGATGAAACTCATACCTGACACCATTAGCAAGATAAGAACCTATGGCTA
GGCAGGTCATGGGTTCTAATAGAAAACCAGTACTGTTACTCTGCTGATGG
ACTTAGTATAAAATTGACCCCTACTGACATTGTTATACACCTAGATCAGT
ACACN

NCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGGGACTGCTACCATCGT
CCCTGAACCCAAGGGACCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAA
CATCATGACCAAGAAGCAAGTTGGGGTGGAAAGGGTTTATTTGGCTTACA
CTTCCATACTGCTGCTCATCACCAAAGGAAGTCAGGACTGGAACTCAAAC
AGGTCAGGGAGCAGGAGCTGATGCAAAGGCCATGGAGGGATGTTCTTTAC
TGGCTTGCCTCCCCTGGCTTGCTCAGCCTCCTGTCTTATAGAACCAAGAC
TACCAGCCCAGAGATGGTCCCACCCATAAGGGGCCTTTCCCCCTTGATCA
CTAATTGAGAAAATGCCTGACAGTTGTATCTCATGGAGGCATTTCCTCAA
CTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAA
ACTAGCCAATACAGGACCCATTGCTAACTTCCTGGAAAATATCTGTATAT
TATTCCATCCTCAATTTTATAATAAAAATACCCTATTTTTATTATACAGA
ATTGAGAGTAAGACTGTGGGAACGGGTGCAGAATTACTCATCTCTGCCTG
TGACTCTAGGTTCTACTTTCATTTCCACCTAGAGAGAGTGACTGTAACAT
ACATTTCTCTTGAAATTGTGAACAGCCCTCACTTTTACATTAGTAACATC
TAATTTCTGGATATCAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_n05.b1 MSMg01no522_n05.b1 CHROMAT_FILE:
MSMg01no522_n05.b1 PHD_FILE: MSMg01no522_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:32 2005
         (624 letters)



>mm_chr10_112109758_112110781
          Length = 1024

 Score =  857 bits (443), Expect = 0.0
 Identities = 467/475 (98%)
 Strand = Plus / Minus

                                                                        
Query: 150  tggaactgaagagatggctttgtagttaagagtaatgtctgttctttcaagggcacagat 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tggaactgaagagatggctttgtagttaagagtaatgtctgttctttcaagggcacagat 965

                                                                        
Query: 210  tcaattcctagaattcacatggtggctcataactataattcctggtgatccactgtcttt 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  tcaattcctagaattcacatggtggctcataactataattcctggtgatccactgtcttt 905

                                                                        
Query: 270  ttctggcatcagcaggctcggtgctatgtgctgcaagacttagatgcagtcacgcataca 329
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 904  ttctggcatcagcaggctcggcgctatgtgctgcaagacttagatgcagtcacgcataca 845

                                                                        
Query: 330  cataaaataaaaatgaatggaccttgtaaaataggagggtttaaatattttaaaagggaa 389
            |||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||
Sbjct: 844  cataaaatgaaaatgaatgaaccttgtaaaataggaggctttaaatattttagaagggaa 785

                                                                        
Query: 390  gaaagatatttttagatttcatatttatattacttctatagctagaatgtagcaaacaaa 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 784  gaaagatatttttagatttcatatttatattacttctatagctagaatgtaccaaacaaa 725

                                                                        
Query: 450  attaatgactgggacttggtaagacatgacaaatgaagcaataatggcataaatagtatg 509
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 724  attaatgactgggacttggtaagacatggcaaatgaagcaataatggcataaatagtatg 665

                                                                        
Query: 510  gaaataactgactgcttccactttggattgaagttccattctacaagatgaaactcatac 569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  gaaataactgactgcttccactttggattgaagttccattctacaagatgaaactcatac 605

                                                                   
Query: 570  ctgacaccattagcaagataagaacctatggctaggcaggtcatgggttctaata 624
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 604  ctgacaccattagcaagataagaacctatggctagacaggtcatgggttctaata 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no522_n05.g1 MSMg01no522_n05.g1 CHROMAT_FILE:
MSMg01no522_n05.g1 PHD_FILE: MSMg01no522_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:32 2005
         (598 letters)



>mm_chr10_111910610_111911607
          Length = 998

 Score = 1089 bits (563), Expect = 0.0
 Identities = 587/595 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggggactgctaccatcgtccctgaacccaagggacctgtcttagtcagggtttctattcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggggactgctaccatcgtccctgaacccaagggacctgtcttagtcagggtttctattcc 263

                                                                       
Query: 64  tgcacaaacatcatgaccaagaagcaagttggggtggaaagggtttatttggcttacact 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 tgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttatttggcttacact 323

                                                                       
Query: 124 tccatactgctgctcatcaccaaaggaagtcaggactggaactcaaacaggtcagggagc 183
           |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 324 tccatactgctgttcatcaccaaaggaagtcaggactggaactcaagcaggtcaggaagc 383

                                                                       
Query: 184 aggagctgatgcaaaggccatggagggatgttctttactggcttgcctcccctggcttgc 243
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 aggagctgatgcagaggccatggagagatgttctttactggcttgcctcccctggcttgc 443

                                                                       
Query: 244 tcagcctcctgtcttatagaaccaagactaccagcccagagatggtcccacccataaggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcagcctcctgtcttatagaaccaagactaccagcccagagatggtcccacccataaggg 503

                                                                       
Query: 304 gcctttcccccttgatcactaattgagaaaatgcctgacagttgtatctcatggaggcat 363
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 gcctttcccccttgatcactaattgagaaaatgccttacagttgtatctcatggaggcat 563

                                                                       
Query: 364 ttcctcaactgaagctcctttctctgtgataactccagctgtgtcaagttgacacaaaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcctcaactgaagctcctttctctgtgataactccagctgtgtcaagttgacacaaaac 623

                                                                       
Query: 424 tagccaatacaggacccattgctaacttcctggaaaatatctgtatattattccatcctc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tagccaatacaggacccattgctaacttcctggaaaatatctgtatattattccatcctc 683

                                                                       
Query: 484 aattttataataaaaataccctatttttattatacagaattgagagtaagactgtgggaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aattttataataaaaataccctatttttattatacagaattgagagtaagactgtgggaa 743

                                                                  
Query: 544 cgggtgcagaattactcatctctgcctgtgactctaggttctactttcatttcca 598
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 744 cgggtgcagaattactcatctctgcctatgactctaggttctactttcatttcca 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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