Query= MSMg01no522_o17.b1 MSMg01no522_o17.b1 CHROMAT_FILE:
MSMg01no522_o17.b1 PHD_FILE: MSMg01no522_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:39 2005
(522 letters)
>mm_chr10_52196135_52197056
Length = 922
Score = 897 bits (464), Expect = 0.0
Identities = 479/488 (98%), Gaps = 8/488 (1%)
Strand = Plus / Minus
Query: 1 cattatctctgtgagaaaggcaaagactgagaggaatattcttggctcttttcacatgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cattatctctgtgagaaaggcaaagactgagaggaatattcttggctcttttcacatgac 425
Query: 61 acaacaccaagtgtaatttctcactgtacttacatttgcataaactgtaactgtcacctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acaacaccaagtgtaatttctcactgtacttacatttgcataaactgtaactgtcacctc 365
Query: 121 atgctttgcttgctttagtaataaaaatgagaactgttttatttgtactacccttgagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atgctttgcttgctttagtaataaaaatgagaactgttttatttgtactacccttgagct 305
Query: 181 cagacacctagaatcccttggtacctcagaaaggccttcagcatatcctttaatccatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagacacctagaatcccttggtacctcagaaaggccttcagcatatcctttaatccatga 245
Query: 241 agacttagcctttttggccatgggtcaggtcaacaggtgac----agaattttattagac 296
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 244 agacttagcctttttggccatgggtcaggtcaacaggtgacagatagaattttattagac 185
Query: 297 agatgatttattgataatagatgaaaataaagaatagataggtagacagatagatggtag 356
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 184 agatgatttattgataatagatgaaaattaagaataga----tagacagatagatggtag 129
Query: 357 ccaatgagtgatagataggtatggtggtttgaacaagaatggcccccatagattcatgtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ccaatgagtgatagataggtatggtggtttgaacaagaatggcccccatagattcatgtg 69
Query: 417 tttgaatgcttggtaactagggagtgagggtattaggaagagtggccttgtaggagtagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tttgaatgcttggtaactagggagtgagggtattaggaagagtggccttgtaggagtagc 9
Query: 477 tgtggctt 484
||||||||
Sbjct: 8 tgtggctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_o17.g1 MSMg01no522_o17.g1 CHROMAT_FILE:
MSMg01no522_o17.g1 PHD_FILE: MSMg01no522_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:39 2005
(624 letters)
>mm_chr10_52022908_52023931
Length = 1024
Score = 1114 bits (576), Expect = 0.0
Identities = 612/624 (98%)
Strand = Plus / Plus
Query: 1 cttggtgttactgcaacccccagataactggttacaaataccgtccattgcttctgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggtgttactgcaacccccagataactggttacaaataccgtccattgcttctgcatg 260
Query: 61 tgttgtaacttagatttgaggaaacattcgaattgagactcaggtaatcaatattctcat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgttgtaacttagatttgaggaaacattcgaattgagactcaggtaatcaatgttctcat 320
Query: 121 gaacctagaaaactacttaggtccagtgattaagatacagcataaccctctgtcctcttg 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gaacctagaaaactacttaggtccagtgattaagacacagcataaccctctgtcctcttg 380
Query: 181 gatttggaattagctaaatggaagatgcagagcacacagctcaactttatctagaattgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttggaattagctaaatggaagatgcagagcacacagctcaactttatctagaattgc 440
Query: 241 ttcttggctcaaatgccaagtctgtctattgtcttcccatccacatttgtttctggggac 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 441 ttcttggctcaaatgccaagtctgtctattgtcttcccatccacatttttttctgcggac 500
Query: 301 ctttggacctggtcacctcacagtcttgtcattccataacttcccctcagagccagtgtc 360
|||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 501 ctttggacctggtcacctcacagtcttgacattccataacttctcttcagagccagtgtc 560
Query: 361 accccctaacctgtcttaattagagccagcctctggatcttgcttttgtcgaattcacct 420
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct: 561 accccctaacctgtcttaatcagagccagcctctggatcttgcttttgccgaattcgcct 620
Query: 421 aaacagcatatagctgggtctgaaggctcccacgagcagctagcccagcagtcaccggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacagcatatagctgggtctgaaggctcccacgagcagctagcccagcagtcaccggct 680
Query: 481 tttgggctcactgaaggcaaggattcagaaagtgacatgaatgctgagatttcgtttgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgggctcactgaaggcaaggattcagaaagtgacatgaatgctgagatttcgtttgtt 740
Query: 541 tgtttgattgttggatcattccacatggaacttgctgttccatgtagcaactgtcagcca 600
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgattgtttgttggatcattccacatggaacttgctgttccatgtagcaactgtcagcca 800
Query: 601 tcttggttttgatgttgtaccaaa 624
||||||||||||||||||||||||
Sbjct: 801 tcttggttttgatgttgtaccaaa 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
