BAC Information

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BAC

Clone NameMSMg01-523K12
Chromosome10 (Build37)
Map Location 113,205,911 - 113,206,204
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042639, 4921506J03Rik, LOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523K12.T7 (MSMg01no523_k12.b1)MSMg01-523K12.TJ (MSMg01no523_k12.g1)
ACCAG593921AG593922
length805793
length of high quality
(start - end)
304 (41 - 344)386 (126 - 511)
definitionCHROMAT_FILE: MSMg01no523_k12.b1 PHD_FILE: MSMg01no523_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:38 2005CHROMAT_FILE: MSMg01no523_k12.g1 PHD_FILE: MSMg01no523_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTTTAGTTGGGGAGGGGATACGACTACTTTCCGGAGAGGATCCGCG
GAATTCTACATTACATCAAAGATTTCAGTTCCTGGAGTTATTTCCTTTAG
AAAATAGATTATCAGAGATATGATGTCATTCTGAAAGAGAAGCTAAATTC
CATTTTCGAACAACCTTGTATATAAAAGCAATTATGAGTAGTACTCACCA
CAGAGTTGAGATGCTAATATCAGATACAAAGGGAAAGAACCAGAGAAATA
GAAATCAATTGAAACTATGGAACCAAGAATGACCTTTAACTATCACATAG
TCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGAGT
GAGATCTCTCTCTTTTATCCCGTTGTCCCATCTATATCCTTTCACCCCCT
ATTTTTTTATTCCCCTTCTTTTCTCTTTTTTTTTCCGTGTTGCTTTTTTT
TTCTTCTCCCATTTTCCTCTCCCCCCTTTTTTGTTTTTTTCGTCTTATTT
TATCGGTCTTTCTTTCTCTATCGTTATATATTATTTTGTTCCCGCTTTTT
CTTGCGTGTTTTTTTTATTTGCATTCCATTTCTTTTTACCCTTTCCCTTT
TTCGTGCTGTGTCTCTTTAAACATTCGTTCCCCTATTCCTTTTCGTTTTT
TTTTATTTTCCTTGCCTCCCCGGTTTCCATCCCCGATTTGCATGCCTCTT
TTCAGTTTCGTTGGTTCTCGCTTTTTTCTTTTATTGGCGCTCTGCTGCGC
TTTCCTCTACTTCGCTGTCCTGCCCTTTCTATCGCCGTTTCCTCTCTAGC
CCGTG
TCTCCCCTCCCCAGTTGAGGCCCTCCTCAAAAATNTTAGTGATCAAGCGG
CTATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATGGAATGTCTG
AGAAGCACTTGAAAAAATGATCAGCATCCTTAATCATCAGGGATGTGCAA
ATCAAAGCAACCCAGCTAAGATAAAAAATTCAGGTGACAGCAGATGCTGA
TGAGATTGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTTCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGCTCTTCCTCAGAAAATTGG
ACATAGTACTACCGTAGGACCCCGCAATACCTCTCCTGGGCATAAATCCA
GAAGATGTTCCAACTGCTAAGAAGAACACATGCTCCACTATGTTCATAGC
AGCCTTATTTATAGTAGCCAGAAACTGGAAAGTACCCAGATGTCCCTCAA
CAAAGGAGTGGATACAGAAAATGTGGTACATTTACATAATGGTGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGAAAATGGATGTA
CCTATTAGGGCATCATCCTGAGTGAGGCAACACTATCATTATAGAACTCC
CATGAAATGTACTCCCTGATTAGTGGATTTTAGCCCAGAAACTTAGAATA
CTCAAGATACAAGATAAAAATTGTAAAATACATTGAAACTCGAGTAAGAA
CATATACCACAGTGGTGAACACCTTGTCCCTTTCTTAGAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_k12.b1 MSMg01no523_k12.b1 CHROMAT_FILE:
MSMg01no523_k12.b1 PHD_FILE: MSMg01no523_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:38 2005
         (304 letters)



>mm_chr10_113205702_113206405
          Length = 704

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggaattctacattacatcaaagatttcagttcctggagttatttcctttagaaaatagat 69
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattctacatcaaatcaaagatttcagttcctggagttatttcctttagaaaatagat 269

                                                                       
Query: 70  tatcagagatatgatgtcattctgaaagagaagctaaattccattttcgaacaaccttgt 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tatcagagatatgatgtcattctgaaagagaagctaaattccattttcgaacaaccttgt 329

                                                                       
Query: 130 atataaaagcaattatgagtagtactcaccacagagttgagatgctaatatcagatacaa 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atataaaagcaattatgagtagtactcaccacagagttgagatgctaatatcagatacaa 389

                                                                       
Query: 190 agggaaagaaccagagaaatagaaatcaattgaaactatggaaccaagaatgacctttaa 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agggaaagaaccagagaaatagaaatcaattgaaactatggaaccaagaatgacctttaa 449

                                                                 
Query: 250 ctatcacatagtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctatcacatagtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)