BAC Information

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BAC

Clone NameMSMg01-523O18
Chromosome10 (Build37)
Map Location 129,050,064 - 129,050,539
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796
Downstream geneGA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523O18.T7 (MSMg01no523_o18.b1)MSMg01-523O18.TJ (MSMg01no523_o18.g1)
ACCAG594122AG594123
length763750
length of high quality
(start - end)		651 (45 - 695)476 (59 - 534)
definitionCHROMAT_FILE: MSMg01no523_o18.b1 PHD_FILE: MSMg01no523_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:00 2005CHROMAT_FILE: MSMg01no523_o18.g1 PHD_FILE: MSMg01no523_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCAACAGTTGTATAGCAAATGACTGAAAAGTACTTAAAGAAATGTT
CAACATCCATAGTGGTCAGGGAAATGCAAACCAAAGTGACCCTGGGATTC
CACCTTACACCCATCGCAATGGCTAAGATCAAACTCAAGTGACAGCACAT
GCTGGCTAGGATGTGGAGAAAGGGGACTACTTAGCCATTGATGGTGTGAT
TGTAAACTGGTATAGCCACTCTGGAAATCAATCTGGTGGTTCCTCAGAAA
ATTTCAAATAGTTCTACCTTAGGACCTGTCTATACCACTCCTGGGCATAT
ACCCAAAAGATTCTCCACCATAAGAACATATCCTCCACTATGTTCATAGC
AGCTTTATTCATAATAGCCAGAAAAAAGACGCTAACCAGATGACCCTCAA
CTGAAGAATGGATACAGAAAATGTGGTTCACTCACACAATGAAATACTAT
TCAGCTATTAAAAATTAGGACATCATGAATTTTGCAGGCAAATGGATGGA
ACTAGAAAATATCCTCTTGAGTGAGATAACCCGGACCCAGAGGGACATGC
ATAGCATGTATTCATTAATAAGTGCATATTAGCTCCAAAGTATAGAATAC
CCAGGATACAACTCACAGACCCTAAGAAGTTAAACAAGAAGGCTCAGGTG
AGGATACTTCAATCCCACTTAGAAGAGGGAACAAAATAATCACGAGAGGC
AGAGAGAGGGAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTAATGGAAAATTTGCTTATTTAAAAAGACCTTGACTCCCCA
TTTTAGAGGGATGCTAGAGGGGTAATGCAGAAGTGAGGAAGCACCCTCCT
ACAGGCAAAGGGGAGGGGGAATAGAATAGGGGGTTGTGGAGGGGATACCA
GGAAGGTAGAGAACATTTGAAATGTAAATAAAAAAATAATAGTCAATAAA
AAAATAAAAAGACCTTGAACACACCATGAATACTTTATTCCATAATCTTA
TTTTCACACATCTCCAATTGATGATCATATTTGCTTTTTATTTGTGTGCT
TAGTGCAGCCTTTTGTGCTACAAGAAACAGGTTTTTCTTTATTTATAGTG
ATTATTTTGGTGTTGAAAAGGCTAGTACATGGATTGTTTTGGCATAAATT
GCAGATTTCTCATTTAATTCTATTTCAACTCATACTGCATACCTGCTTTT
ATATCTTCTGGAGTTTAGAAAGCTAAAATTTACATTTTCCAAGCTGGCTT
TTAGCTCATTTTCTGCATATGACATGCCTCTGCATTACTGAAATTCCCAC
AGGAATGATGGAGGGCAGATGTTAGGCAGATGCTTCTCTTCCTTGTGCTC
CCTTCCTTCCTGAAATTTAGTTCTGATTTTTTCTGGTAACGAACTGCTCT
CATGGGGTTTGGATAACACACTTTGGTGCACGTTTTTATTTTCCTGCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_o18.g1 MSMg01no523_o18.g1 CHROMAT_FILE:
MSMg01no523_o18.g1 PHD_FILE: MSMg01no523_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:00 2005
         (476 letters)



>mm_chr10_129049864_129050739
          Length = 876

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatggaaaatttgcttatttaaaaagaccttgactccccattttagagggatgctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatggaaaatttgcttatttaaaaagaccttgactccccattttagagggatgctaga 260

                                                                       
Query: 61  ggggtaatgcagaagtgaggaagcaccctcctacaggcaaaggggagggggaatagaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggtaatgcagaagtgaggaagcaccctcctacaggcaaaggggagggggaatagaata 320

                                                                       
Query: 121 gggggttgtggaggggataccaggaaggtagagaacatttgaaatgtaaataaaaaaata 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gggggttgtggaggggataccaggatggtagagaacatttgaaatgtaaataaaaaaata 380

                                                                       
Query: 181 atagtcaataaaaaaataaaaagaccttgaacacaccatgaatactttattccataatct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 atagtcaataaaaaaataaaaagaccttgaacacaccatgaatactttattctataatct 440

                                                                       
Query: 241 tattttcacacatctccaattgatgatcatatttgctttttatttgtgtgcttagtgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattttcacacatctccaattgatgatcatatttgctttttatttgtgtgcttagtgcag 500

                                                                       
Query: 301 ccttttgtgctacaagaaacaggtttttctttatttatagtgattattttggtgttgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttttgtgctacaagaaacaggtttttctttatttatagtgattattttggtgttgaaa 560

                                                                       
Query: 361 aggctagtacatggattgttttggcataaattgcagatttctcatttaattctatttcaa 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agactagtacatggattgttttggcataaattgcagatttctcatttaattctatttcaa 620

                                                                   
Query: 421 ctcatactgcatacctgcttttatatcttctggagtttagaaagctaaaatttaca 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcatactgcatacctgcttttatatcttctggagtttagaaagctaaaatttaca 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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