BAC Information

Click to search

BAC

Clone NameMSMg01-524L08
Chromosome10 (Build37)
Map Location 93,733,136 - 93,802,789
singlet/doubletdoublet
Overlap geneEG215472, LOC100041955
Upstream geneElk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12
Downstream geneTmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524L08.T7 (MSMg01no524_l08.b1)MSMg01-524L08.TJ (MSMg01no524_l08.g1)
ACCAG594721AG594722
length771759
length of high quality
(start - end)		603 (37 - 639)647 (65 - 711)
definitionCHROMAT_FILE: MSMg01no524_l08.b1 PHD_FILE: MSMg01no524_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:03 2005CHROMAT_FILE: MSMg01no524_l08.g1 PHD_FILE: MSMg01no524_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(93,733,136 - 93,733,734)(93,802,143 - 93,802,789)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTT
CTCGAATGACCTAGGACTGGTCATTAGCTTCTCTGGGCTTCTATTTTCTC
ACTATAAAATGGCAGCGGTAGCGGCAGTTCTGTTATGAGAATGGTGTAGA
GCTAGGCAGTACCGGACACATAGCGCTCACGTAGCAAATGCTATCATATA
TCAGTCACTTGTCTGGGCTTCAGGACTACAGCTGTGAGTGAGACAAACCA
AAGCCCTGATCCTGATGGAATTCACGTCGTGTTTAGGAGGAGGAAGGTAA
AAATGGTAAGCAGTGACAGAAAACACTCACGGAGTGCCTTGCAGGGACAC
CTCCTCAGGGAGATGGGGATCAGGGAAGACCTCCTGACATCTACACCAGA
GCTTGAATGATGAGTTAAGGTACTGGGACAGAGTGTTCTAGTAATGGGTG
AACAGATGCAGTGACCCAAAGATAGGGAAGAATTTAGGGTGTCCAAGGGA
AATAAACGGCACACCCATCTAGCCCAGATGCACTCTGCCGAACCTGTTTT
TTCTAGCACAAATCATGCTAGCAATAAACCTGTAGCAAAGCAGGAGGCCC
TACAGCTCTTGAGACAGTTGTATTTGCTGTGCTCTGAATGTGACATGTGA
CCCTCCTGTTCACGTGTTTAAACACGAAGCTCCCAGCTAGGGGTGCCAGT
TTTGAAGCTGGTGATGCTAAAGGAGATGAGGTTACTANATGGGGCGGGTT
TGCTGTTAACCTGGGCATGCN

GTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTAAGTGAGGAGATGGAAAAGGTGACAAAGAGCTTC
AACACCTACAAAAGATTTGCAGGTAAACGGAAAAGACACTGAGAGAATGG
GGGTGGAGCAGGCAGTGAGGGTGGAGGAGGGGAAGCCTGCAGGACTAAGA
GTCCTGAAGGGTGTGTACAATGGCAGGCAGGGTCAGATTGAGGGAACAGT
ATATACATTCCCAGCTGAAAACAGCGCTTTAGGATGAGCACTGAGAGCAT
CCGGGCAGCAGGCACAGAGCAGCTTGGAAAAGGAAACAGACACCACGCCC
CGAGGGGCTCTATGTGCACTGACAGTGGAGTTGGACTTTATCTGGCAGGC
AATAGAAAGCTCCTTGCTGTGTTCTGAGCAGCATACGATTAGATCTGGAG
GCTGAGAGCATTACCTTGACTGAAGTAATATGTGCTTCAAGCATTACTGA
TTGGATCAGTGATGATGTGAAGGCAGGCGTGGTCCAGGTAAGTAGTGATG
GTGTGGATACAGTTATGTGTGGATACAGAGATAGGTGGATGCAGTGATGC
TGTGGATACAGTGATGGGTGGATGCAGTGACAGGTGGATGCAGTGATGCT
GTGGATGCAATGATGGTGTGGATGCAGTGATGGGTGGATACAGTGATAGG
GTGGATGCAGTGATAGATGGATACAGTGATGGGGTAGATGCAGTGATGGG
TGGATGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_l08.b1 MSMg01no524_l08.b1 CHROMAT_FILE:
MSMg01no524_l08.b1 PHD_FILE: MSMg01no524_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:03 2005
         (603 letters)



>mm_chr10_93732932_93733934
          Length = 1003

 Score = 1158 bits (599), Expect = 0.0
 Identities = 599/599 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttctcgaatgacctaggactggtcattagcttctctgggcttctattttctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttctcgaatgacctaggactggtcattagcttctctgggcttctattttctc 264

                                                                       
Query: 65  actataaaatggcagcggtagcggcagttctgttatgagaatggtgtagagctaggcagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actataaaatggcagcggtagcggcagttctgttatgagaatggtgtagagctaggcagt 324

                                                                       
Query: 125 accggacacatagcgctcacgtagcaaatgctatcatatatcagtcacttgtctgggctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accggacacatagcgctcacgtagcaaatgctatcatatatcagtcacttgtctgggctt 384

                                                                       
Query: 185 caggactacagctgtgagtgagacaaaccaaagccctgatcctgatggaattcacgtcgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caggactacagctgtgagtgagacaaaccaaagccctgatcctgatggaattcacgtcgt 444

                                                                       
Query: 245 gtttaggaggaggaaggtaaaaatggtaagcagtgacagaaaacactcacggagtgcctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtttaggaggaggaaggtaaaaatggtaagcagtgacagaaaacactcacggagtgcctt 504

                                                                       
Query: 305 gcagggacacctcctcagggagatggggatcagggaagacctcctgacatctacaccaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagggacacctcctcagggagatggggatcagggaagacctcctgacatctacaccaga 564

                                                                       
Query: 365 gcttgaatgatgagttaaggtactgggacagagtgttctagtaatgggtgaacagatgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcttgaatgatgagttaaggtactgggacagagtgttctagtaatgggtgaacagatgca 624

                                                                       
Query: 425 gtgacccaaagatagggaagaatttagggtgtccaagggaaataaacggcacacccatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgacccaaagatagggaagaatttagggtgtccaagggaaataaacggcacacccatct 684

                                                                       
Query: 485 agcccagatgcactctgccgaacctgttttttctagcacaaatcatgctagcaataaacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agcccagatgcactctgccgaacctgttttttctagcacaaatcatgctagcaataaacc 744

                                                                      
Query: 545 tgtagcaaagcaggaggccctacagctcttgagacagttgtatttgctgtgctctgaat 603
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtagcaaagcaggaggccctacagctcttgagacagttgtatttgctgtgctctgaat 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_l08.g1 MSMg01no524_l08.g1 CHROMAT_FILE:
MSMg01no524_l08.g1 PHD_FILE: MSMg01no524_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:04 2005
         (647 letters)



>mm_chr10_93801943_93802989
          Length = 1047

 Score = 1236 bits (639), Expect = 0.0
 Identities = 645/647 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagtgaggagatggaaaaggtgacaaagagcttcaacacctacaaaagatttgcaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ctaagtgaggagatggaaaaggtgacaaagagcttcaacacctacaaaagatttgcaggt 788

                                                                       
Query: 61  aaacggaaaagacactgagagaatgggggtggagcaggcagtgagggtggaggaggggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 aaacggaaaagacactgagagaatgggggtggagcaggcagtgagggtggaggaggggaa 728

                                                                       
Query: 121 gcctgcaggactaagagtcctgaagggtgtgtacaatggcaggcagggtcagattgaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gcctgcaggactaagagtcctgaagggtgtgtacaatggcaggcagggtcagattgaggg 668

                                                                       
Query: 181 aacagtatatacattcccagctgaaaacagcgctttaggatgagcactgagagcatccgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aacagtatatacattcccagctgaaaacagcgctttaggatgagcactgagagcatccgg 608

                                                                       
Query: 241 gcagcaggcacagagcagcttggaaaaggaaacagacaccacgccccgaggggctctatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcagcaggcacagagcagcttggaaaaggaaacagacaccacgccccgaggggctctatg 548

                                                                       
Query: 301 tgcactgacagtggagttggactttatctggcaggcaatagaaagctccttgctgtgttc 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tgcactgacagtggagctggactttatctggcaggcaatagaaagctccttgctgtgttc 488

                                                                       
Query: 361 tgagcagcatacgattagatctggaggctgagagcattaccttgactgaagtaatatgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgagcagcatacgattagatctggaggctgagagcattaccttgactgaagtaatatgtg 428

                                                                       
Query: 421 cttcaagcattactgattggatcagtgatgatgtgaaggcaggcgtggtccaggtaagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cttcaagcattactgattggatcagtgatgatgtgaaggcaggcgtggtccaggtaagta 368

                                                                       
Query: 481 gtgatggtgtggatacagttatgtgtggatacagagataggtggatgcagtgatgctgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtgatggtgtggatacagttatgtgtggatacagagataggtggatgcagtgatgctgtg 308

                                                                       
Query: 541 gatacagtgatgggtggatgcagtgacaggtggatgcagtgatgctgtggatgcaatgat 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 307 gatacagtgatgggtggatgcagtgacaggtggatgcagtgatgttgtggatgcaatgat 248

                                                          
Query: 601 ggtgtggatgcagtgatgggtggatacagtgatagggtggatgcagt 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggtgtggatgcagtgatgggtggatacagtgatagggtggatgcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |