BAC Information

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BAC

Clone NameMSMg01-524L21
Chromosome10 (Build37)
Map Location 52,093,219 - 52,093,791
singlet/doubletsinglet
Overlap geneGopc
Upstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, LOC625811
Downstream geneEG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1, Pln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524L21.T7 (MSMg01no524_l21.b1)MSMg01-524L21.TJ (MSMg01no524_l21.g1)
ACCAG594747AG594748
length776776
length of high quality
(start - end)
526 (42 - 567)600 (72 - 671)
definitionCHROMAT_FILE: MSMg01no524_l21.b1 PHD_FILE: MSMg01no524_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:06 2005CHROMAT_FILE: MSMg01no524_l21.g1 PHD_FILE: MSMg01no524_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGCCCATACATAAACATAATAAAAGCAATCTACAGCAAACCAATAGC
CAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAG
GGACTGGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTT
GAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACA
AATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAG
TATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATA
AACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAAT
GGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAA
CAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTGACT
CTAACTAGGGAATTGAAAGATCTGTATGATAAAAACTTCAAATCTCTGAA
GAAAGAAATTAAGGAAGATCTTAGAAGATGCAAAGATCTCCCATGCTCAT
GGATTGGCAGGATCAACATTGTAAAAATGTCTATCTTGCCAAAAGCAATC
TACAGATTCAATGCAATCCCCATCAAAATTCCAANNCTCATTCTTCACGA
ATTGGAAGGAGCAATTTGCAAATTTGTCTGGGAATACAAAAAACTAGCAT
AGCAAAAAGTCTCTCAAGGATAAAAA
GAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAATGATATACCTAACACAGGAATGGGAT
CTGAAAACACACACACACACACACACACACACACACACACACACACACAC
ACACACACGTGAGTGAACATACTAAGGTTATAGAGGCCTGGTACACAGAA
CAGACCTAAAAGAATTAAATGTATGCTAATTAGTGTGCAGCATTATTTTT
GAAATATAAGTCTTAAACTTCTGAGAGGCATTTCTGACCATTTTTTTTTG
TTGTTGGATTGGAGCTGAGACCAAACCCAGTGCTTTGTATTTGCTAGGCA
AGCACTCTACCACTGAGCTAAATCCCCAACCCCCTGACTATCTTTAAAAA
TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AATAAATAAGAGTTAAGATAAAATGTCCAAGGATCCTATAAAATAACTTT
AACACATTATTATTTATATATATTACACATATATTATATGTAATTAGAAA
CTATGTAAGAGAAAGTAAAAGACTCAGTTGGGTAGAAATGCATAACTATT
CTTTCTGCAAAGAGTTTCAGCCATTACTAAATCACCAGTTTCCTCCCACG
TCCCATGGGACACTCTCACAGGTGCAAGCCACTTTCATAGTAATAAAACG
TTGCTTGCACTTCTACTANGCTGATGTTTGCACTAACATGCAAAGAATCT
GTTAATACCGTGGCTGCACATGATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_l21.g1 MSMg01no524_l21.g1 CHROMAT_FILE:
MSMg01no524_l21.g1 PHD_FILE: MSMg01no524_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:06 2005
         (600 letters)



>mm_chr10_52093007_52094006
          Length = 1000

 Score =  982 bits (508), Expect = 0.0
 Identities = 565/604 (93%), Gaps = 35/604 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgatatacctaacacaggaatgggatctgaaaacacacacacacacacacacacaca 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 213 caatgatatacctaacacaggactgggatctgaaaacacacacacacacacacacacaca 272

                                                                       
Query: 61  cacacacacacacacacacacacacacgtgagtgaacatactaaggttatagaggcctgg 120
           |||||||||||||||            |||||||||||||||||||||||||||||||||
Sbjct: 273 cacacacacacacac------------gtgagtgaacatactaaggttatagaggcctgg 320

                                                                       
Query: 121 tacacagaacagacctaaaagaattaaatgtatgctaattagtgtgcagcattatttttg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tacacagaacagacctaaaagaattaaatgtatgctaattagtatgcagcattatttttg 380

                                                                       
Query: 181 aaatataagtcttaaacttctgagaggcatttctgaccatttttttttgttgttggattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatataagtcttaaacttctgagaggcatttctgaccatttttttttgttgttggattg 440

                                                                       
Query: 241 gagctgagaccaaacccagtgctttgtatttgctaggcaagcactctaccactgagctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagctgagaccaaacccagtgctttgtatttgctaggcaagcactctaccactgagctaa 500

                                                                       
Query: 301 atccccaaccccctgactatctttaaaaataaataaataaataaataaataaataaataa 360
           ||||||||||||||| |||||||||||||||||||||||||||||||||||  ||     
Sbjct: 501 atccccaaccccctgtctatctttaaaaataaataaataaataaataaata--ta----- 553

                                                                       
Query: 361 ataaataaataaataaataaataaataagagttaagataaaatgtccaaggatcctataa 420
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ---------taaataaataaataaataagagttaagataaaatgtccaaggatcctataa 604

                                                                       
Query: 421 aataactttaacacattattatttatatatattacacatatattatatgtaattagaaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aataactttaacacattattatttatatatattacacatatattatatgtaattagaaac 664

                                                                       
Query: 481 tatgtaagagaaagtaaaagactcagttgggtagaaatgcataa----ctattctttctg 536
           ||||||||||||||||||||||||||| ||||||||||||||||    ||   |||||||
Sbjct: 665 tatgtaagagaaagtaaaagactcagtggggtagaaatgcataagaaact---ctttctg 721

                                                                       
Query: 537 caaagagtttcagccattactaaatcaccagtttcctcccacgtcccatgggacactctc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 caaagagtttcagccattactaaatcaccagtttcctcccacgtcccatgggacactctc 781

               
Query: 597 acag 600
           ||||
Sbjct: 782 acag 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)