BAC Information

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BAC

Clone NameMSMg01-525E01
Chromosome10 (Build37)
Map Location 43,786,099 - 43,786,761
singlet/doubletsinglet
Overlap genenone
Upstream geneSobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1
Downstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525E01.T7 (MSMg01no525_e01.b1)MSMg01-525E01.TJ (MSMg01no525_e01.g1)
ACCAG595133AG595134
length796730
length of high quality
(start - end)
262 (39 - 300)663 (68 - 730)
definitionCHROMAT_FILE: MSMg01no525_e01.b1 PHD_FILE: MSMg01no525_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:48 2005CHROMAT_FILE: MSMg01no525_e01.g1 PHD_FILE: MSMg01no525_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
CATGTTTCCAAGGGTGTTTTTTGTTAGTAACAACTGGCTGGCCATTGAAT
CTTCAACTGCTTATCATATTTGTTTCAATGGGTGTGGTGGCTCACATCTT
TAGTCCCAGCACCAAGAGGCCGAAGCAGGTGGCCAATCTGGGCTACATAG
CAAGTTCCAGGCCACAGCTACATCCTTAGACTCTGTCTTTAAAAAAAGAA
AAAGAAAAAGAAGGAAAAGGATGAGAAGGAGGAGGAGGGAGGGAGGGAGA
GACGGGTGCCGGTTTTTTTTTTTTTGTGTCCGTCTGTGTGGTCGGGGGGG
GAAATGTATTTTGAATACCGTGTTTTCCCCCTATAATACCCCCCCCCCTT
AGCGGTTTTCCCTTTATTTTCCTTTTGTTTTTTTCCCCTGCTTTCCGTTT
ATGTGTTTCGCTTTATTTTTTTTGGCTTACTCGAACCGGTGATGGTTGTT
ATTTATATAAGTTCCTTTTTATTTCTACCTTCCCCATCCCCTGATGGACC
AGCGGATTTCATACTCCATTGACGCTTTTTTTTTTCTTTTCCGCCTCCGC
CTTTTTTATCTTTTTTCTCCGAATTTCTTATTTTTCCGCCCCCCCACTTT
GGCTCTTTTTTTCTGAACCCTGTTCTTTGGGCGCACGTCACCTTTTCTCT
CTATCGCGGTATACCCTTACCTTGTCTTGCTCCTCCGACCGTTTTTTCTT
TTTTATACCGTCTTATCCGCGCTTTGTGCTGTCGATAGACTTGATG
TGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATATATTTCAGTAACGCTGGAAGGAAAGTGGAC
ACTGAATCCCAGCTAGCAAAGAGATCTACCAGGACTGTCCAACCTGTGGC
ACAATGCCATAAACTTAACTTAAAACATGATGAGGTTTTATGGGACTTAT
TATTGTAGCTCAATTGTACCATTCTTGAGCATAAACTCTGTAGATGACAA
TTTCATGTCCCAGTGTCCAATGGTCAGCCACACCTGACAGGTTCTGCCAG
GAAGTTACTGTTCCCAGGGCTATGAAATCAGACTTAAATGCACGGGAGGA
AATGAAGGCAGGGAAGGTGTTCTAACACTGAAGGTGCCTACCCCGAATCT
ATTTCCTTTAGCTGCCCCCTGCCATCTTCTCCCCCTACATTTTCTTGGCT
TGGAACACTAATTTGTTCAACCACCTACCCATCATGCACTTCAGAAGCCA
TATCCAACTGAAGCGGTCACCCATGAGGTCAGATCCTTGAGTTTTGATCC
TTTTACCCTGTCATTAATTTGGGCATATCTCTTACCGGATGTTATAACAT
TGTTTTATGTCTGTGTACCTGAAAAGCGTTCATAGTCACCATGGTATGAT
TCCGATCCGAGGGATGAAGGGTGGATGCTAAAGGACTAGGAAAGGCCTCT
GTTTAAAAAGTCCACAGGAAGAAACAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_e01.g1 MSMg01no525_e01.g1 CHROMAT_FILE:
MSMg01no525_e01.g1 PHD_FILE: MSMg01no525_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:48 2005
         (663 letters)



>mm_chr10_43785899_43786961
          Length = 1063

 Score = 1266 bits (655), Expect = 0.0
 Identities = 661/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatatttcagtaacgctggaaggaaagtggacactgaatcccagctagcaaagagatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatatttcagtaacgctggaaggaaagtggacactgaatcccagctagcaaagagatct 260

                                                                       
Query: 61  accaggactgtccaacctgtggcacaatgccataaacttaacttaaaacatgatgaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaggactgtccaacctgtggcacaatgccataaacttaacttaaaacatgatgaggtt 320

                                                                       
Query: 121 ttatgggacttattattgtagctcaattgtaccattcttgagcataaactctgtagatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgggacttattattgtagctcaattgtaccattcttgagcataaactctgtagatga 380

                                                                       
Query: 181 caatttcatgtcccagtgtccaatggtcagccacacctgacaggttctgccaggaagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatttcatgtcccagtgtccaatggtcagccacacctgacaggttctgccaggaagtta 440

                                                                       
Query: 241 ctgttcccagggctatgaaatcagacttaaatgcacgggaggaaatgaaggcagggaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgttcccagggctatgaaatcagacttaaatgcacgggaggaaatgaaggcagggaagg 500

                                                                       
Query: 301 tgttctaacactgaaggtgcctaccccgaatctatttcctttagctgccccctgccatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttctaacactgaaggtgcctaccccgaatctatttcctttagctgccccctgccatct 560

                                                                       
Query: 361 tctccccctacattttcttggcttggaacactaatttgttcaaccacctacccatcatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctccccctacattttcttggcttggaacactaatttgttcaaccacctacccatcatgc 620

                                                                       
Query: 421 acttcagaagccatatccaactgaagcggtcacccatgaggtcagatccttgagttttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 acttcagaagccatatccaactgaagcggtcacccatgaggtcagatccttgagttttgg 680

                                                                       
Query: 481 tccttttaccctgtcattaatttgggcatatctcttaccggatgttataacattgtttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccttttaccctgtcattaatttgggcatatctcttaccggatgttataacattgtttta 740

                                                                       
Query: 541 tgtctgtgtacctgaaaagcgttcatagtcaccatggtatgattccgatccgagggatga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtctgtgtacctgaaaagcgttcatagtcaccatggtatgattccgatccgagggatga 800

                                                                       
Query: 601 agggtggatgctaaaggactaggaaaggcctctgtttaaaaagtccacaggaagaaacaa 660
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 801 agggtggatgctaaaggactaggaaagtcctctgtttaaaaagtccacaggaagaaacaa 860

              
Query: 661 gcc 663
           |||
Sbjct: 861 gcc 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)