BAC Information

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BAC

Clone NameMSMg01-525E04
Chromosome10 (Build37)
Map Location 118,326,779 - 118,327,440
singlet/doubletsinglet
Overlap geneLOC668223
Upstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2
Downstream geneLOC100042861, LOC674417, Cand1, Grip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525E04.T7 (MSMg01no525_e04.b1)MSMg01-525E04.TJ (MSMg01no525_e04.g1)
ACCAG595139AG595140
length743736
length of high quality
(start - end)
523 (38 - 560)668 (69 - 736)
definitionCHROMAT_FILE: MSMg01no525_e04.b1 PHD_FILE: MSMg01no525_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:48 2005CHROMAT_FILE: MSMg01no525_e04.g1 PHD_FILE: MSMg01no525_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGAGGATCCGCGGAATTCT
TCATATTCTGGATGCTCAATTACAGTACCATTGCAGGCAAATTTCTTCTT
AAACACCTTCACTAGTTTCTTTTTATCATAATCATCAGTGATCCCTTGGA
CAGTTGTAAGGGTCTTCCTGCTGTTTCTCTATTGAGTTCTTTTTGTTGTT
GTTGTTGTTTTGTTTTTCGAGACAGGGTTTTTCTGTATAGCCCTGGCTGC
CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACC
TGCCTCTGCCTCCCAACTCCTGGTATTAAAGGTGTGCGCCACCACGCCCG
GCTCTCTGTTGAATTCTTATATGGATATAATCCTCAGTGCTAGCAGGAAG
CAGGTCATCACCCTTATTTGCATCAGCAAAGGGGTCGAAAGAGTGGAGGT
TCTGGATAGCGGACATATTATAGATTCCTTTACCTTGGTAGAAACAGCCT
TTGGAAGGTGTCTGCGGGGGAAGGCAGGTAGGGAGGGGGGAAGGGAGGGA
CTGAAGCGTCGGGAATCGAGGGGGCTCAAGTGGGAGGCAGCTGAGTCCTC
AGTGGTGGCTCAGTGACTAGGGTGGACATTTACTTCTGACTTAGCACTTT
AGCCTGTTAATGGGGCAAGAGGTACCTGGATGGCATCAGTCTTCAGTCAC
CAGGCCCAGAAAGATGGGAGGCTTTCCCGGGGAAGAAGACCAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGAAGGGATATGTCTTGGAGTGCTGTGCTAC
TGCATAAGGCATTCTGTCCACCCACTATGAATAGATGTTTCAAAAAGCAT
TACCAATAGAGAAGATAAATTTATGTATAGATTCTATATACCATGGATAC
TATGGTAGGGATAAGAGGAGTGAGACTACAGGGATTGAGCTACTCTATGC
CATTCACTTGCATTGTTGAGCTCTGGTTGTGTAATGGCTATTCCTGGTAA
CTTGACTACATCTGGAATGAACTACAATCCAGAAATGGGGGGCTCACCTG
CAATCCAGATCTTGAGGCAGGAAGACACAGGCTTCTGACTCGGATCTTGA
CATGGAGATAGTGGCCATGAAAATCTTAGGCTCAAGCATGGTAGTACATG
CTTTCAATCCCAGGATATTGAGGCAAGCAGATCTTTGAGTTCAAGGCCAG
CCTGGGACAAAGCAAGTTCCAAATCCAGACGTGGTGGTACCACGTCTTAA
CCTTAACCTGGGCCACACCTTCTGCTGGAGGCCTATATAAGGACGGTGGA
AGAAGAAAGACTCACTCTTCTTTGACTGCTTTCACTTACTTGCCAGCACA
TCTGTTGGAACTGACTTCTTCAGGATTCCAGCTTATACAAAGACCAGCTG
AAACAACTAGCCTCATGGGACTGGGCAACTACTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_e04.g1 MSMg01no525_e04.g1 CHROMAT_FILE:
MSMg01no525_e04.g1 PHD_FILE: MSMg01no525_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:49 2005
         (668 letters)



>mm_chr10_118326579_118327646
          Length = 1068

 Score = 1162 bits (601), Expect = 0.0
 Identities = 649/669 (97%), Gaps = 8/669 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaagggatatgtcttggagtgctgtgctactgcataaggcattctgtccacccactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaagggatatgtcttggagtgctgtgctactgcataaggcattctgtccacccactat 260

                                                                       
Query: 61  gaatagatgtttcaaaaagcattaccaatagagaagataaatttatgtatagattctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gaatagatgtttcaaaaagcattaccaatagagaagataaatttatgtatagactctata 320

                                                                       
Query: 121 taccatggatactatggtagggataagaggagtgagactacagggattgagctactctat 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 taccatggatactatggtaggaataagaggagtgagactacagggattgagctaccctat 380

                                                                       
Query: 181 gccattcacttgcattgttgagctctggttgtgtaatggctattcctggtaacttgacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccattcacttgcattgttgagctctggttgtgtaatggctattcctggtaacttgacta 440

                                                                       
Query: 241 catctggaatgaactacaatccagaaatggggggctcacctgcaatccagatcttgaggc 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 catctggaatgaactacaatccagaaatggagggctcacctgcaatccagatcttgaggc 500

                                                                       
Query: 301 aggaagacacaggcttctgactcggatcttgacatggagatagtggccatgaaaatctta 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaagacacaggcttctgacgcggatcttgacatggagatagtggccatgaaaatctta 560

                                                                       
Query: 361 ggctcaagcatggtagtacatgctttcaatcccaggatattgaggcaagcagatctttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctcaagcatggtagtacatgctttcaatcccaggatattgaggcaagcagatctttga 620

                                                                       
Query: 421 gttcaaggccagcctgggacaaagcaagttccaaatccagacgtggtggtac-cacgtct 479
           ||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||    
Sbjct: 621 gttcaaggccagcctgggacagagcaagttccaaatccagacatggtggtccgcac---- 676

                                                                       
Query: 480 taaccttaacctgggccacaccttctgctggaggcctatataaggacggtggaagaagaa 539
              || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ---ccataacctgggccacaccttctgctggaggcctatataaggacggtggaagaagaa 733

                                                                       
Query: 540 agactcactcttctttgactgctttcacttacttgccagcacatctgttggaactgactt 599
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 734 agactcactcttctttgactgccttcacttacttgccagcacatgtgttggaactgactt 793

                                                                       
Query: 600 cttcaggattccagcttatacaaagaccagctgaaacaactagcctcatgggactgggca 659
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 794 cttcaggattccagcttatacaaagacccgctgaaacaactagcctcatgggactgggca 853

                    
Query: 660 actactagt 668
           |||||||||
Sbjct: 854 actactagt 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)