BAC Information

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BAC

Clone NameMSMg01-525H23
Chromosome10 (Build37)
Map Location 100,328,438 - 100,328,913
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525H23.T7 (MSMg01no525_h23.b1)MSMg01-525H23.TJ (MSMg01no525_h23.g1)
ACCAG595320AG595321
length749750
length of high quality
(start - end)		576 (43 - 618)475 (74 - 548)
definitionCHROMAT_FILE: MSMg01no525_h23.b1 PHD_FILE: MSMg01no525_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:08 2005CHROMAT_FILE: MSMg01no525_h23.g1 PHD_FILE: MSMg01no525_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCCGACTGATAACGAATGGCTGAGAAGCACCTGAAAAAATGTTCA
GCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACTCTGAGATTCCA
CCTCACACCAGTCAGAATGGATAAGATCAAAACTTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAAGCTTGTACAACCACTGTGGAAATTAGTCTAGCGGTTCCTCAGAAA
ATTGGACATAGTACTATGGGAGGATCCCGCAATACCTCTCCTGGACCTAT
ATCCAGAAGATGCCCCAACTGGCAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCATTATTTATAATAGCCAGATGCTGGAAATAACCCAGATGTCC
CTCAACAGAGGAATGGACACAGAAATTGTGGTACATTTACACAATGGAGT
ACTACTCAGCTATTAAAAAGAATGAATTTATTAAATTCCTAGGCAAATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATTACAAAAGAA
CTCACATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAT
ACTACCCAAGTTACAAGATACAATTTGTAAAACANCATGAACTCATAAAG
AATGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAAGTGGGACAA

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGACAATACGAGGGAAGATATGGGTTT
ATAGCCTATGTTCTGTGAGTGTATGTAAAGGCAATATCCTAACTCTAAGA
TAGCAGAGGAGAATCTTAAAAGCATAGATGCAGATCATAATTGAGTTTCT
TTATTTGAGGCTCAGATTTGCTGGCTTTAATCTAATTTAAAATCCTGAGC
AGCAGCCCAAAGTCTGTGATATCATCTAATTTATTAGGTAAGAAACAGCC
CACCATAGTAGCTACACCTCTCTGTCACCTTTGTTCTTAAGTTTTCTAGG
GTCTAGAGGAAATGAAGAAAGTGCAACTTGGGACAGCAGAGGGGTGGGGA
AAAACTCGCTTGGTTCCTTTCTGGTCCTTTCTCTGCATACTAATAAAGTA
ATTATTCTCTTCTCGGGTTTTCTGGTGAGATTTTTTGCAGTGTCTCCTTT
TCCTAGTGAGAGACACTTGAGGTGAAAAAGAAAAGCTCATTAAAAATGGT
TTGTTTTATTGTCAGATGTGATTTAAAGTGGTGTTTCTTTATTCACTCAG
CTGCTCGCTCCAATCTGAACCCTCCACCACTGTTTCCACAGCTACCTTCT
GACATGTTGCTAGGTGACATGTTGCTAGGTGATGAACAATTTTCTCAGTA
ACTATTGTAGAACTGCAGTTGCTCTTAATTCAGAAAGGGTTTTTGGTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_h23.g1 MSMg01no525_h23.g1 CHROMAT_FILE:
MSMg01no525_h23.g1 PHD_FILE: MSMg01no525_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:08 2005
         (475 letters)



>mm_chr10_100328238_100329113
          Length = 876

 Score =  890 bits (460), Expect = 0.0
 Identities = 472/476 (99%), Gaps = 1/476 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacaatacgagggaagatatgggtttatagcctatgttctgtgagtgtatgtaaaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgacaatacgagggaagatatgggtttatagcctatgttctgtgagtgtatgtaaaggca 617

                                                                       
Query: 61  atatcctaactctaagatagcagaggagaatcttaaaagcatagatgcagatcataattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atatcctaactctaagatagcagaggagaatcttaaaagcatagatgcagatcataattg 557

                                                                       
Query: 121 agtttctttatttgaggctcagatttgctggctttaatctaatttaaaatcctgagcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agtttctttatttgaggctcagatttgctggctttaatctaatttaaaatcctgagcagc 497

                                                                       
Query: 181 agcccaaagtctgtgatatcatctaatttattaggtaagaaacagcccaccatagtagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agcccaaagtctgtgatatcatctaatttattaggtaagaaacagcccaccatagtagct 437

                                                                       
Query: 241 acacctctctgtcacctttgttcttaagttttctagggtctagaggaaatgaagaaagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acacctctctgtcacctttgttcttaagttttctagggtctagaggaaatgaagaaagtg 377

                                                                       
Query: 301 caacttgggacagcagaggggtgggg-aaaaactcgcttggttcctttctggtcctttct 359
           |||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||
Sbjct: 376 caacttgggacagcagaggggtggggaaaaaactcgcttgtttcctttctgttcctttct 317

                                                                       
Query: 360 ctgcatactaataaagtaattattctcttctcgggttttctggtgagattttttgcagtg 419
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 316 ctgcatactaataaagtaattattctcttctcgggttttctgttgagattttttgcagtg 257

                                                                   
Query: 420 tctccttttcctagtgagagacacttgaggtgaaaaagaaaagctcattaaaaatg 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tctccttttcctagtgagagacacttgaggtgaaaaagaaaagctcattaaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space:   402690
Effective search space used:   402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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