BAC Information

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BAC

Clone NameMSMg01-525J19
Chromosome10 (Build37)
Map Location 62,731,129 - 62,731,521
singlet/doubletsinglet
Overlap geneHerc4
Upstream geneHk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik
Downstream geneSirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525J19.T7 (MSMg01no525_j19.b1)MSMg01-525J19.TJ (MSMg01no525_j19.g1)
ACCAG595405AG595406
length752762
length of high quality
(start - end)
562 (57 - 618)419 (69 - 487)
definitionCHROMAT_FILE: MSMg01no525_j19.b1 PHD_FILE: MSMg01no525_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:17 2005CHROMAT_FILE: MSMg01no525_j19.g1 PHD_FILE: MSMg01no525_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTACTTGG
TCGAAGGAGAGAACCAATTCTTGCAAGCTGTCCTCTGACCTCTCTATATA
TGCTGTGGAGCACACGCGCGCGCACACGCGCGCACACACACACACACACA
CACACACACACGCATGCACACAACAAATATGGAAAGGTTTTAGGATGCTA
AGCAATCTGTGCAGCTTTCCACGGTCACAGAGTGTAGCTCAGTGTGGCAC
AGTCTCCTGCTGCTGCCTGCACATCTACCGATCTGCAGATCTCAGCTCTC
ATCAGCTCCAGCACCATGACTGCCTGCGAGCTGACATGCTTCCGACCATG
ATGATAATGGACTGAACCTCTGAAATTATAAGCCAGCCCCAAATGAATGC
TTTCCTTTGTAAGAGTTGCCATGGTCATGGTGTCTCTTCACAGTAATAAA
ACCCAAACTAAGACACCTAACAAGCCTACATCCTACAGTGGACATCACGG
ATCCCATACCACATGACATACATGATGGAGCTCACCAATGATTACAACAC
CCAGGAGCTGAAGGTAGGAGGATCAAGGGTTCAAGGTCATCTACCCTTGA
ATACATATTGAGTTTGAGGCCAGACTGGTATGGTCATGAGACCCTGCCTC
CAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAAATAAATAAAGGAGCCTCAGTAGAAATATCCCAGTGATGGGCTAGAGA
CA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCCTTTATAGAGTTCATTGTTTAGCATATGA
GACAGACACTAAATGAATATATAGTAGTGATAACTGTATGAAAACAGGAA
AACGTGTGGTTCTTTGAGAATTTAGTATTTTGAAATGTTTTATATGAACT
TGTAAATTGAAGTTAATAATGAAAAGATGAATGTGGTGTGGGTGGTACCC
ACCAGCAGGAGCAGTTAATACCAACTTCAGCACAATTAAACACATCCATG
TGTTTTTGTTTCTAGCTCTTTTGCATTTATTTTGTTATAGCATTCTGTTA
TACCGTTAAAAACTTAAGGTACATTAGAACCTGCTAGTTTAAAGCAGCAC
AACTCTCAGGTTATATATGTGTGTGTGTGTGTGTATGTGTATATATATAT
ATATATATATATATATATATACACACACACACACACACACACACACAGAT
AGAGAGATTGACTCTCAGAGAGTGGTTCGCGCACACATTTTTTTTCGCTC
TCTCTGTGTGTGCGTTCTCCATATATACATGCGAGAGAGAGAGAGACACA
CACACACGTGCGTATATGTGCGCGTGTGTGTGTGTTTTTGTTGCGGGGGG
GGGGGGGNGNGCCCACACACACANNCCCTCTTTTTTCCTTTTTTTTTTTT
GTGTGTTGTGTTGTTTTTTGTAAAAATTTTTAAAAAACACACGTTTTTTT
GTTTTTTGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_j19.g1 MSMg01no525_j19.g1 CHROMAT_FILE:
MSMg01no525_j19.g1 PHD_FILE: MSMg01no525_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:17 2005
         (419 letters)



>mm_chr10_62730929_62731747
          Length = 819

 Score =  741 bits (383), Expect = 0.0
 Identities = 392/397 (98%), Gaps = 4/397 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctttatagagttcattgtttagcatatgagacagacactaaatgaatatatagtagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctttatagagttcattgtttagcatatgagacagacactaaatgaatatatagtagt 260

                                                                       
Query: 61  gataactgtatgaaaacaggaaaacgtgtggttctttgagaatttagtattttgaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataactgtatgaaaacaggaaaacgtgtggttctttgagaatttagtattttgaaatgt 320

                                                                       
Query: 121 tttatatgaacttgtaaattgaagttaataatgaaaagatgaatgtggtgtgggtggtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatatgaacttgtaaattgaagttaataatgaaaagatgaatgtggtgtgggtggtac 380

                                                                       
Query: 181 ccaccagcaggagcagttaataccaacttcagcacaattaaacacatccatgtgtttttg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ccaccagcaggagcagttaataccaactttagcacaattaaacacatccatgtgtttttg 440

                                                                       
Query: 241 tttctagctcttttgcatttattttgttatagcattctgttataccgttaaaaacttaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctagctcttttgcatttattttgttatagcattctgttataccgttaaaaacttaag 500

                                                                       
Query: 301 gtacattagaacctgctagtttaaagcagcacaactctcaggttatatatgtgtgtgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacattagaacctgctagtttaaagcagcacaactctcaggttatatatgtgtgtgtgt 560

                                                
Query: 361 gtgtgtatgtgtatatatatatatatatatatatata 397
           ||||||||    |||||||||||||||||||||||||
Sbjct: 561 gtgtgtat----atatatatatatatatatatatata 593



 Score = 85.8 bits (44), Expect = 5e-21
 Identities = 44/44 (100%)
 Strand = Plus / Minus

                                                       
Query: 376 tatatatatatatatatatatatatatacacacacacacacaca 419
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tatatatatatatatatatatatatatacacacacacacacaca 550



 Score = 78.1 bits (40), Expect = 1e-18
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                       
Query: 374 tatatatatatatatatatatatatatatacacacacacacaca 417
           |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 593 tatatatatatatatatatatatatatacacacacacacacaca 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 3
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)