BAC Information

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BAC

Clone NameMSMg01-525L18
Chromosome10 (Build37)
Map Location 33,598,660 - 33,599,243
singlet/doubletsinglet
Overlap geneSult3a1
Upstream geneTcba1, EG667761, Trdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399
Downstream geneRshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525L18.T7 (MSMg01no525_l18.b1)MSMg01-525L18.TJ (MSMg01no525_l18.g1)
ACCAG595498AG595499
length753766
length of high quality
(start - end)
614 (37 - 650)583 (68 - 650)
definitionCHROMAT_FILE: MSMg01no525_l18.b1 PHD_FILE: MSMg01no525_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:27 2005CHROMAT_FILE: MSMg01no525_l18.g1 PHD_FILE: MSMg01no525_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:27 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTT
ACTGCTTTTAATATTCTTCCATAGTTTTGTGCATTTGGTGTTTTGATTAT
TATGTGTTGGGAGTAATTTCTTCTCTGGTCCAATCTATTTGGAGTTCTGT
AGGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGGTTGGGGAAGTTT
TCTGCTTTAATTTTGTTGAAGATATTTACTGGCCCTTTAAGTTGGGAATC
TTCACTCTCTTCTATACCTTTTATCCTTAGGCTTGGTCTTCTTATTGTGT
CCTGGATTTCCTGGATGTTTTGGGTTAGGAGCTTTATGCATTTTACATTT
TCTTTGATTGTTGTGTCAATGTGTTCTATGGTATCTTCTGCACGTAAGAT
ATTCTCTTCTATCTCTTGAATTTTGCTTGTTATAGTTGCACCTATGGCTC
CTGACTTCTTTCCTAGGTTTTCTCTTTTCAGAGTTGTCTCCTTTTGTGAT
ATGTTTATTGTTTCTTCTTCCATTTTCGTATCCTGGATGTTTTTGTTCAA
TTGTTTGAACAATTTGATGTGTTCTCCTGTATTTCTTTAAGGGAGTTGTT
TATGTCCTTCTTATAGTCCTCCATCATCATCATGAGAAGTGACTTCAGAT
TCATACCTTGCTTTTCTGGTGTTATGGTGCATCCAGGACTTGCTATGGTG
GGAGAGTTGGGTTCTGATGATGGCCAATAACCTTGGTTTCTCTTGCTTCT
GTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTTTTTGTGTTTGGAAAAAAAAGCCTCACATC
TATCTCAAAAGTTTGTGTTTGAAGTATGAGTGTTTTCTTAATACAATGAT
TGATAGATGGCAAAATGTAGCTTTAAAATTCTAATGTATTTTTTACCTAT
TAAAGGATTTTTCTTTCTAAAAATTGATTATGATTAGGTAGTAGTAGTTA
GTGATATCTATTTACTATGCTCCTAAACTGGTTTATTTCACTGATCAGTG
ATATAAGGAGAGGTATCCAACTGATCCGTACTATGAGTTCAGTGATGTGT
AGAGTAAGTTGTAGACAGTAGAGCTCTGTTTACTTAGTGACTATCCTGTG
CTTCTCCCATTAGGTGTCGTTGGAGACTGGAAACATTATTTGACTGTGGA
TCAGAGTGAAAGATTTGACAAGATATTTCACAGAAACATGAAAAACATCC
CCTTAAAATTCATCTGGGACATAAATGAGGAGTAGAATATTAATCACCAC
GTGAATAAACCATATGAAAATGTACTAGCCAGAGGTTGTACTTTAATATT
AAAATTAATATATTTGTCTCATTTAACTATTAGTTATAAAACATAATTCA
CAGACAAAATGATTACCTTGTGCCTAGATTGTTTTCCATGACATAAATTT
CAAATGGAGCTACTAGCATTGGTTTCCTTAAAAAAAAAAAAAAAAAAAAA
GTTTTAAGGAAAGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_l18.g1 MSMg01no525_l18.g1 CHROMAT_FILE:
MSMg01no525_l18.g1 PHD_FILE: MSMg01no525_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:27 2005
         (583 letters)



>mm_chr10_33598460_33599443
          Length = 984

 Score = 1091 bits (564), Expect = 0.0
 Identities = 579/584 (99%), Gaps = 1/584 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttttgtgtttgg-aaaaaaaagcctcacatctatctcaaaagtttgtgtttgaagta 59
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttttgtgtttggaaaaaaaaagcctcacatctatctcaaaagtttgtgtttgaagta 260

                                                                       
Query: 60  tgagtgttttcttaatacaatgattgatagatggcaaaatgtagctttaaaattctaatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtgttttcttaatacaatgattgatagatggcaaaatgtagctttaaaattctaatg 320

                                                                       
Query: 120 tattttttacctattaaaggatttttctttctaaaaattgattatgattaggtagtagta 179
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttttacctactaaaggatttttctttctaaaaattgattatgattaggtagtagta 380

                                                                       
Query: 180 gttagtgatatctatttactatgctcctaaactggtttatttcactgatcagtgatataa 239
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 381 gttagtgatatctatttactatgctcctaaactggtttattttactgatcagtaatataa 440

                                                                       
Query: 240 ggagaggtatccaactgatccgtactatgagttcagtgatgtgtagagtaagttgtagac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagaggtatccaactgatccgtactatgagttcagtgatgtgtagagtaagttgtagac 500

                                                                       
Query: 300 agtagagctctgtttacttagtgactatcctgtgcttctcccattaggtgtcgttggaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 agtagagctctgtttacttagtgactatcctgtgcttctcccattaggtgttgttggaga 560

                                                                       
Query: 360 ctggaaacattatttgactgtggatcagagtgaaagatttgacaagatatttcacagaaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggaaacattatttgactgtggatcagagtgaaagatttgacaagatatttcacagaaa 620

                                                                       
Query: 420 catgaaaaacatccccttaaaattcatctgggacataaatgaggagtagaatattaatca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgaaaaacatccccttaaaattcatctgggacataaatgaggagtagaatattaatca 680

                                                                       
Query: 480 ccacgtgaataaaccatatgaaaatgtactagccagaggttgtactttaatattaaaatt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccacgtgaataaaccatatgaaaatgtactagccagaggttgtactttaatattaaaatt 740

                                                       
Query: 540 aatatatttgtctcatttaactattagttataaaacataattca 583
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatatatttgtctcatttaactattagttataaaacataattca 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space:   558102
Effective search space used:   558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)