Query= MSMg01no525_m23.b1 MSMg01no525_m23.b1 CHROMAT_FILE:
MSMg01no525_m23.b1 PHD_FILE: MSMg01no525_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:33 2005
(591 letters)
>mm_chr10_24151495_24152485
Length = 991
Score = 946 bits (489), Expect = 0.0
Identities = 576/629 (91%), Gaps = 42/629 (6%)
Strand = Plus / Plus
Query: 5 gaattctttattc-acttctcagtctcaatcatctgacacttatgatgatttggtacgct 63
||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 163 gaattctttattcaacaaatcagtctcaatcatctgacacttatgatgatttggtaagct 222
Query: 64 tagataactttatttgtagtccgattagtactatctgttaatgaactcctaattcattgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tagataactttatttgtagtccgattagtactatctgttaatgaactcctaattcattgc 282
Query: 124 tactacttaaagatctaacttaggtactgtttgaaaatcctttataggtagagaattgta 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 283 tactacttaaagatctaacttaggtactgtttgaaaatccttcataggtagagaattgta 342
Query: 184 cttctgaaccttttcctctgtgcagcacacacacacacacacacatacaca--------- 234
|||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 343 cttctgtaccttttcctctgtgcagcacacacacacacacacacacacacacacacacac 402
Query: 235 --a-acacacac--cgtttatatagcattcatcttcctacctctttatcaataacttcag 289
| |||||||| ||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 403 acacacacacacatcgtttatatagcactcatcttcctacctctctatcaataacttcag 462
Query: 290 atctaaagattcattacatttgtggggtttcttggtttaagtgtgc---att-------- 338
|||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 463 atctaaagattcattacatttgtggggtttcttggtttaagtgtgcgtgattctttagaa 522
Query: 339 ----------------gcgcaggctggcctgaaactcacaatctttctgcctcagcctcc 382
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 523 aacatcttactgcatagcgcaggctggcctgaaactcacaatctttctgcctcaacctcc 582
Query: 383 tcactgtgagggtcacaatgtgtactaccatgtctgactttacagttatcgtttgtttgt 442
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tcactgagagggtcacaatgtgtactaccatgtctgactttacagttatcgtttgtttgt 642
Query: 443 ggctgcgattctagaaagaaataatgtagaaggtgcattttaagctactatttctccgat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggctgcgattctagaaagaaataatgtagaaggtgcattttaagctactatttctccgat 702
Query: 503 gtagatccctctacagaaataatcagaataggcattggaccccattctcagcgacttcac 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gtagatccctctacagaaataatcagaataggcattggaccccattctcagcgacttcac 762
Query: 563 tgtgtacgaccttaaacattatggcatca 591
|||||||||||||||||||||||||||||
Sbjct: 763 tgtgtacgaccttaaacattatggcatca 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_m23.g1 MSMg01no525_m23.g1 CHROMAT_FILE:
MSMg01no525_m23.g1 PHD_FILE: MSMg01no525_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:33 2005
(564 letters)
>mm_chr10_24311326_24312289
Length = 964
Score = 1038 bits (537), Expect = 0.0
Identities = 558/565 (98%), Gaps = 2/565 (0%)
Strand = Plus / Minus
Query: 1 actaaggtggccacttacggtatgcatgggt-aggatgatgtactcagctcttttgcttg 59
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 764 actaaggtggccacttacggtatgcatgggtga-gatgatgtactcagctcttttgcttg 706
Query: 60 agtcttgtacaatgttttttgccccccctctaaaaaggttacttgatcagctataagaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 705 agtcttgtacaatgttttttgccccccctctaaaaaggttacttgatcagcgataagaca 646
Query: 120 gagagagaatcctgcagaacaatagcaaagtgaccagacttggagtgtttgtgtacttaa 179
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gagagagaatccagcagaacaatagcaaagtgaccagacttggagtgtttgtgtacttaa 586
Query: 180 ggaaggaatcttgcagattttcagttttcagttgtagacattttcttataagagcaagca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggaaggaatcttgcagattttcagttttcagttgtagacattttcttataagagcaagca 526
Query: 240 ggaagtcagtgccagccctcaaagaggaaatcaaaagtctcagggaaacatactggtgga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaagtcagtgccagccctcaaagaggaaatcaaaagtctcagggaaacatactggtgga 466
Query: 300 acctgactcaaagcctaaacccatgtgcgacacatacactgggctgtcagcattatagga 359
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 acgtgactcaaagccaaaacccatgtgcgacacatacactgggctgtcagcattatagga 406
Query: 360 agtatgactctagccctataagggcatctggaaacggggagatttgtcctaggatccttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtatgactctagccctataagggcatctggaaacggggagatttgtcctaggatccttg 346
Query: 420 gggaactggcttctcagtgtttctggtgtgtcctaggttcagtcatgtaaatgaattcca 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gggaactggcttcccagtgtttctggtgtgtcctaggttcagtcatgtaaatgaattcca 286
Query: 480 cccctctccctcccagaaaagcggggcagggggcgtatgccagagtctttttgaaaaata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cccctctccctcccagaaaagcggggcagggggcgtatgccagagtctttttgaaaaata 226
Query: 540 gtaataaatatttttctaaaaccct 564
|||||||||||||||||||||||||
Sbjct: 225 gtaataaatatttttctaaaaccct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
