BAC Information

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BAC

Clone NameMSMg01-525P04
Chromosome10 (Build37)
Map Location 26,214,151 - 26,214,580
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208
Downstream geneLOC667572, LOC100040349, Arhgap18, Lama2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525P04.T7 (MSMg01no525_p04.b1)MSMg01-525P04.TJ (MSMg01no525_p04.g1)
ACCAG595661AG595662
length738735
length of high quality
(start - end)
433 (46 - 478)558 (68 - 625)
definitionCHROMAT_FILE: MSMg01no525_p04.b1 PHD_FILE: MSMg01no525_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:43 2005CHROMAT_FILE: MSMg01no525_p04.g1 PHD_FILE: MSMg01no525_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACTTTATCCACTTTGAAATTATGTTAACTCCTTAAATGGAAATCAGTCT
TAAAGGCGGAAGGGACAAATGCATTCGAAACTGTTCCTGCTACTGCCACA
TGGTGGCGCCATGTCAGCTGGTGAATGTTAAACTTTGGCAAACTTTGGAT
TAGTCTTCAGTTGATTAAGAACTGTTTGATCTGCGCAGGAATGCACAGTT
GTGCTCTGGCCTCCATTTCACAGAAGAGATAACCAGAGTCCAGACAAGTA
ATTACTATTCAAAGTCCACCCGGAGGTCTGCTACTGAACCAGGAGTACAA
TGTACTTCCTGTCTCTTTGGTTTGGAAGCGCATCTTCTTCTCCGTCATCT
CCCTCTACCCTCACCCCCACCCCGCCCCCATGGGTAGATGTGTGTGGGTG
TGTTTGAACAAGTGTCTGGGTATGCATGTGGAAGCCAGGGGTCAACTCGG
GGATTCTACCTTAATCATCCCCATTTATTCTTTGGAATACGACGTATCTA
CAAACATAGTTTGCTGATTCGTCTAGACTTCCTGGCTAGGGATTCTCATA
GATCCATCCGATAGGAGATGGCAGGTGTGTACCACATATTCCATACCTGT
TTTTGTTTTCGTTTCTTTTTCTCTTCCTTTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTTTATCATCATTCACATTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTCTAGCTCTGTTCTCCATTTTTTGATAGG
GTTATTTGTTTCTCTGGAGTTTGACTTCTTGAGTCCTATGTAGCAAAATG
CTGGGTCCGGTTTACATAACTAGTCCATTAGTCTATATCTTTTTATTGGG
GAACTGAGTCCATTTATATTAAAAATATTACAGAATGCTGATTGTTGTTT
CTTGTTATTTTTGTTGTTAGAGATAGAATTATGTTTGTGTGGCTATCTTC
TTTTGGATTTGTTGAAAGAATTTTACTTTCTTGCTCTTTCTAGGGTGTTG
TTTCCTTCCTTGTGTTGGAGCTTTCCATCTACTATACTTTATAGGGCTGG
AAGTATAGTATGGATATTGTGGATATTGCATAAATTTGGTTTTGCCATGA
AATATTTTGGTTTCTCCATCTATTGAAATTGGGAGTTTTGTTGGGTATAG
TAGTCTGGCATTTGTGTTCTCAGGGTCTGTATGACATCTGCCCAGGATCT
TCTAGCTTTCATAGGCTCTGGAGAGAAGTCTGGTGTAATTCTGATAGGTC
TGCCTCTATTTGTTACATGACTGGCATTTCAGGCCAGCCTGGAAAGGACC
AAATGGTCTTCCTATTTATTTTGTTCATAACAGCCAACATTTGTAAAATA
CTATTTTTTTTGTGTAAAAAGTAAAGATCCCTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_p04.b1 MSMg01no525_p04.b1 CHROMAT_FILE:
MSMg01no525_p04.b1 PHD_FILE: MSMg01no525_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:43 2005
         (433 letters)



>mm_chr10_26213951_26214780
          Length = 830

 Score =  775 bits (401), Expect = 0.0
 Identities = 424/433 (97%), Gaps = 3/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcactttatccactttgaaattatgttaactccttaaatggaaatcagtcttaaag 60
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctcactttatgtactttgaaattatgttaactccttaaatggaaatcagtcttaaag 260

                                                                       
Query: 61  gcggaagggacaaatgcattcgaaactgttcctgctactgccacatggtggcgccatgtc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcggaagggacaaatgtattcgaaactgttcctgctactgccacatggtggcgccatgtc 320

                                                                       
Query: 121 agctggtgaatgttaaactttggcaaactttggattagtcttcagttgattaagaactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctggtgaatgttaaactttggcaaactttggattagtcttcagttgattaagaactgt 380

                                                                       
Query: 181 ttgatctgcgcaggaatgcacagttgtgctctggcctccatttcacagaagagataacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatctgcgcaggaatgcacagttgtgctctggcctccatttcacagaagagataacca 440

                                                                       
Query: 241 gagtccagacaagtaattactattcaaagtccacccggaggtctgctactgaaccaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtccagacaagtaattactattcaaagtccacccggaggtctgctactgaaccaggag 500

                                                                       
Query: 301 tacaatgtacttcctgtctctttggtttggaagcgcatcttcttctccgtcatctccctc 360
           |||||||||||||||||||||||||| ||||||||||| ||||||   ||||||||||||
Sbjct: 501 tacaatgtacttcctgtctctttggtctggaagcgcattttcttc---gtcatctccctc 557

                                                                       
Query: 361 taccctcacccccaccccgcccccatgggtagatgtgtgtgggtgtgtttgaacaagtgt 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tacccgcacccccaccccgcccccatgggtagatgtgtgtgggtgtgtttgaacaagtgt 617

                        
Query: 421 ctgggtatgcatg 433
           |||||||||||||
Sbjct: 618 ctgggtatgcatg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 830
Length adjustment: 9
Effective length of query: 424
Effective length of database: 821
Effective search space:   348104
Effective search space used:   348104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)