BAC Information

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BAC

Clone NameMSMg01-526E12
Chromosome10 (Build37)
Map Location 50,669,478 - 50,670,047
singlet/doubletsinglet
Overlap geneSim1
Upstream geneLOC629652, Ascc3
Downstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526E12.T7 (MSMg01no526_e12.b1)MSMg01-526E12.TJ (MSMg01no526_e12.g1)
ACCAG595914AG595915
length712728
length of high quality
(start - end)
575 (39 - 613)491 (68 - 558)
definitionCHROMAT_FILE: MSMg01no526_e12.b1 PHD_FILE: MSMg01no526_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:09 2005CHROMAT_FILE: MSMg01no526_e12.g1 PHD_FILE: MSMg01no526_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
ATCTCCTCCTACACTATGCCTGTATAGATGCTGTCATGCTTCCTGCCTTG
ATAATGGACCGAACCTCTGAATCTATAAGCTAGCTCCAATTAAATGTTGT
CCTTTTAAGAGTTACCTTGGTCATGGTATCTGTTCACAGGAGTAAAATCC
TAACTAAGACATGTACCCACATACAAACAGAAGGCATCTGCTGTGTGTGA
CCAAAGGCACAAAATTTCCCCCTCTGTTGCAATGCATGTGTGTACAGTGT
CCTATTCTAAGGGAAACTTTAAGACTTACGTGGCATCAGATCTGCCTTAC
ATGCCTTCACTTTCTGTCAATCTGTGAAGGATTCCTTTGTCACAAACATT
GAATATGATATAGTTTAAATTTAAAAATCTATGCTTTACTTAAGCACACC
TAGAAAAACAGGAAAAAACAACCCTAAAATGGACATCATTTTATGAACGA
AAAGGTGTTTACATGGCTGAATCAAAATCCTATCAGTCCATTTACACAAT
NAAATATATTCCACAATGGAGACTATTGCTTCTTGACACACAATAATAAC
TGTGTACTCCCTATACAAAAGAGCTATGCATAGAAACAGGGAAATACTAA
ATTCAGACATGTCCTCTATTCTCAAGGCAATTTATAGAGGATAAACCATC
ATTAAATATACT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAGGGAAGGACCCTAGATGAAATGTCCTACAGT
GAAGAGAGGGAATTTCAGAGCCCACCTCCAGCAGAATGACAGGGCATTAA
CCCACAGTCTAAACTCGGACCCATAATTGTTTCTGTTTGAAAGAATGCAG
GGATAGAAATGGAGAAGAGCCTGAACAAAAGAAGATACAGCGACTGGCCC
AAAGTGGGATCCAGCTCAAGGGGAGGTCCCAAAGCCTGACACTATTACTG
AGGCTATGGAGAGATCACAAAAAAGGACCTATCATGACCGCCCTCTGAAA
GACCCAACCAACAGCTGCAAAAGTCAGATACAGATATTTGCACCCAAACA
ATGGCCAGAAACTGAGGACCCCTGTGGTTGAATTAGGGAAAGGCTGGAAG
AAGCTGAGGAGGAGAGTGATCCTGTAGGAGGACCAGCAGTCTCAATTAAC
CTGGACATCTGAGATCTCTCAGACACTGGATCACCAGCAAGGCAGCATAC
ACCAGCTAATATGAGGCCCCCCAACACATATACAGCAGAGGACTGATGGG
TCTGGTTTCGGACAGAAAAGATGCACCTGACCTTCAAGAGACAGGAAGCC
CCAGGGAGTTTAGAGGTCTGGTGGGATGGGGTTGCAGTGGGGACATCCTC
ATGGAAACATGGGGCTGGGGAGAAGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_e12.b1 MSMg01no526_e12.b1 CHROMAT_FILE:
MSMg01no526_e12.b1 PHD_FILE: MSMg01no526_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:09 2005
         (575 letters)



>mm_chr10_50669274_50670247
          Length = 974

 Score =  990 bits (512), Expect = 0.0
 Identities = 556/571 (97%), Gaps = 1/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatctcctcctacactatgcctgtatagatgctgtcatgcttcctgccttgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatctcctcctacactatgcctgtatagatgctgtcatgcttcctgccttgat 264

                                                                       
Query: 65  aatggaccgaacctctgaatctataagctagctccaattaaatgttgtccttttaagagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatggaccgaacctctgaatctataagctagctccaattaaatgttgtccttttaagagt 324

                                                                       
Query: 125 taccttggtcatggtatctgttcacaggagtaaaatcctaactaagacatgtacccacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taccttggtcatggtatctgttcacaggagtaaaatcctaactaagacatgtacccacat 384

                                                                       
Query: 185 acaaacagaaggcatctgctgtgtgtgaccaaaggcacaaaatttccccctctgttgcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 acaaacagaaggcatctgctgtgtgtgaccaaaggcacaaaatttccccctctgttgtaa 444

                                                                       
Query: 245 tgcatgtgtgtacagtgtcctattctaagggaaactttaagacttacgtggcatcagatc 304
           ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct: 445 tgcatgtgtgtacagtgtcctattccaagggaaactttaagatttacgtgccatcagatc 504

                                                                       
Query: 305 tgccttacatgccttcactttctgtcaatctgtgaaggattcctttgtcacaaacattga 364
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtcttacatgccttcactttctgtcaatctgtgaaggattcctttgtcacaaacattga 564

                                                                       
Query: 365 atatgatatagtttaaatttaaaaatctatgctttacttaagcacacctagaaaaacagg 424
           |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 565 atatgatagagtttaaatttaaaaatctatgctttgcttaagcacacctagaaaaacaag 624

                                                                       
Query: 425 aaaaaacaaccctaaaatggacatcattttatgaacgaaaaggtgtttacatggctgaat 484
           |||||| |||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 625 aaaaaaaaacc-taaaatggacatcattttatgaactaaaaggtgtttacacggctgaat 683

                                                                       
Query: 485 caaaatcctatcagtccatttacacaatnaaatatattccacaatggagactattgcttc 544
           ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||
Sbjct: 684 caaaatcctatcagtccatatacacaataaaatatattccacaatggagaccattgcttc 743

                                          
Query: 545 ttgacacacaataataactgtgtactcccta 575
           |||||||||||||||||||||||||||||||
Sbjct: 744 ttgacacacaataataactgtgtactcccta 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 974
Length adjustment: 10
Effective length of query: 565
Effective length of database: 964
Effective search space:   544660
Effective search space used:   544660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)