BAC Information

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BAC

Clone NameMSMg01-526G07
Chromosome10 (Build37)
Map Location 122,307,235 - 122,307,780
singlet/doubletsinglet
Overlap genePpm1h
Upstream geneSrgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
Downstream geneD630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526G07.T7 (MSMg01no526_g07.b1)MSMg01-526G07.TJ (MSMg01no526_g07.g1)
ACCAG595999AG596000
length731733
length of high quality
(start - end)
575 (36 - 610)478 (67 - 544)
definitionCHROMAT_FILE: MSMg01no526_g07.b1 PHD_FILE: MSMg01no526_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:18 2005CHROMAT_FILE: MSMg01no526_g07.g1 PHD_FILE: MSMg01no526_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCCA
GTTTACGGAACCATTCATTAATCTCCTTTGGATCAAACTGGTTTTGTGGA
AAGAGTCGGGGGAGGCAGGAATCAGACTTGTTTTGCCACATTCCAGAAGT
GGGAGTCTGTAGAGCTGGCTGTAGAGCTGGCTGTAAAGGCTAAGCTTTGA
AGTGAGCTGTAAGCCCTGGCTATTTGAGAAATGCAGTACCCGTGATGCTC
TCCTGAGATACGGGACTTGGTGACCTTGACTCTGAAACACAGTGATAGCT
GTCGGGAAGCTTAATGTGGGGGAGCCTTAAGCAACACACAGACGGTCCTT
TGTTGGTGGTTAGGCTTAGGAATTTGTTAACCTGAGGATTGAGTAACACT
GACACAGTCTGTAGATACTGTACTGCAAATCTTAAATTCTGTTTGGAGAT
AGAGGACCACTATATAGAGCAGGCTGGCCTGGAACGTGTCATCCCCCTGC
CTCACAGCCTCACGTGCTAGGACTACAGGCACAGACCACATCCAGCTGAA
TTTTGAATTTCTGTCTTTTTCCTAAGCTGGAGATATGCAATATTGGTCTC
CTATGATGCTTGGTGGCAGCAGCAGCAGTGAGCCCCCACTCCCGAGCAGC
CATGATACCTCTGGGACTCTCCGTGGAGACTCCATAGTTAGGGACTGTCA
TAGTTAGGACCTTCAACTTCCCGGTGGCTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTGTAGCTGTCTTCAGAAACACCAGAAGAGGGC
ATCAGATCTCATTACCAATGGTTGTGAGCCACCATGTGGTTGCTGGGAAT
GGAACTCAGGACCTTCAGAAGAGCAGTGAGTGCTCTTAACCTGCTGAGCC
ATCTCTGCAGCCCTGCAGCACACTTCTTTCTCTTGGGCTGCTTCCACTTC
CTTTTAGCAGCTTTCCTTGGTAGCTACCCCACGACTCTGGCTTCTCCAAC
ATCACGGGGTCTCCAAGGCAATTGGGCTTCACCTCGCCAGCTTCCCAACC
GCCCTGTGGGCCTCTGTGCTGTGGTACCCCCTCCCTGCCCTCTAACACAC
TCGTGCCTGGCCTCTGTGGCTTTCCTGAGTCCCAGAGGGAGATTTTTTTT
TGTTTGTTTGTTTTGTTTTGTTTTGTTTTTTCCGAGACAGGATTTCTCTG
TGTATCCTTGGCTGTCCTGGAACTCACTCTTTAGACCAGGCTGGCCTTTG
ACTCAGAAATTCGCCTTCCTCTGCCCTCCCAGTGCTGGGATTAAAGGCGT
GCGCCACCACGCCCTGCCCGAAGGAGATTTTATAATCCCTTTCTAATGTC
CTTGACTCATTTCCAGGCAGCAGAATGAGACTGAGTCTCTGGCCATAGAT
TGAGTTTATATGAGATCCTCAAGCTTGCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_g07.b1 MSMg01no526_g07.b1 CHROMAT_FILE:
MSMg01no526_g07.b1 PHD_FILE: MSMg01no526_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:18 2005
         (575 letters)



>mm_chr10_122307014_122307988
          Length = 975

 Score =  994 bits (514), Expect = 0.0
 Identities = 541/554 (97%), Gaps = 8/554 (1%)
 Strand = Plus / Plus

                                                                       
Query: 22  ggaaccattcattaatctcctttggatcaaactggttttgtggaaagagtcgggggaggc 81
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 222 ggaaccattcattaatctcctttggatcaaactggttttgtggaaagagtggggggaggc 281

                                                                       
Query: 82  aggaatcagacttgttttgccacattccagaagtgggagtctgtagagctggctgtagag 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aggaatcagacttgttttgccacattccagaagtgggagtctgtagagctggctgtagag 341

                                                                       
Query: 142 ctggctgtaaaggctaagctttgaagtgagctgtaagccctggctatttgagaaatgcag 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctggctgtaaaggctaagctttgaagtgagctgtaagccctggctatttgagaaatgcag 401

                                                                       
Query: 202 tacccgtgatgctctcctgagatacgggacttggtgaccttgactctgaaacacagtgat 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tacccgtgatgctctcctgagatacgggacttggtgaccttgactctgaaacacagtgat 461

                                                                       
Query: 262 agctgtcgggaagcttaatgtgggggagccttaagcaacacacagacggtcctttgttgg 321
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agctgttgggaagcttaatgtgggggagccttaagcaacacacagacggtcctttgttgg 521

                                                                       
Query: 322 tggttaggcttaggaatttgttaacctgaggattgagtaacactgacacagtctgtagat 381
           ||||||||||||||||||||||||||||||||||||||      ||||  ||||||||||
Sbjct: 522 tggttaggcttaggaatttgttaacctgaggattgagt------gaca--gtctgtagat 573

                                                                       
Query: 382 actgtactgcaaatcttaaattctgtttggagatagaggaccactatatagagcaggctg 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 actgtactgcaaatcttaaattctgtttggagatagaggaccactatatagagcaggctg 633

                                                                       
Query: 442 gcctggaacgtgtcatccccctgcctcacagcctcacgtgctaggactacaggcacagac 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gcctggaacgtgtcatccccctgcctcacagcctcacgtgctaggactacaggcacagac 693

                                                                       
Query: 502 cacatccagctgaattttgaatttctgtctttttcctaagctggagatatgcaatattgg 561
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 694 cacatccagctgaattttgaatttctgtctttttcctaagctagagatatgcaatattgc 753

                         
Query: 562 tctcctatgatgct 575
           ||||| ||||||||
Sbjct: 754 tctcccatgatgct 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)