BAC Information

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BAC

Clone NameMSMg01-526H10
Chromosome10 (Build37)
Map Location 117,414,737 - 117,576,608
singlet/doubletdoublet
Overlap genenone
Upstream geneBest3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
Downstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526H10.T7 (MSMg01no526_h10.b1)MSMg01-526H10.TJ (MSMg01no526_h10.g1)
ACCAG596052AG596053
length741738
length of high quality
(start - end)		651 (37 - 687)662 (67 - 728)
definitionCHROMAT_FILE: MSMg01no526_h10.b1 PHD_FILE: MSMg01no526_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:23 2005CHROMAT_FILE: MSMg01no526_h10.g1 PHD_FILE: MSMg01no526_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:24 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(117,576,293 - 117,576,608)(117,414,737 - 117,415,398)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAC
AACTCCAAACAAGAGCAATTTGACCATCCTTTTGACATATCAATTCCTCT
TCTTAAAATTTATCTTATGATATGGGAAAAAATATACACTTAATGTTGTT
TGATGTTGACCTGATGGTGTGAGCACAGGAGAGCTGGCTAGCCCAGTGGT
GTGGGCTGACCAACTCAGTTAACATCCAGGCCCAGATCCGGAGCGTCAAG
CTGGCTCACCCTAACACCCACCCTCTGTGCTGCTAGAGTGCTTGAGCTTG
AAAAGGCAGGTCCTGCAGAACCAAAGCTACAGGATCTCCATGACTGGGGC
AACAACAGGATATCTGAGAGGAGTCCCAGCTAGGGCCCAGTATTGATGGT
ATAGCAGAAACCAGAGGCCTCAAGTCAGACCAGTGACTTGCAGCACTGAA
CATTTGCAAGCTAAATACATATGGCTCATCTGAGGCCCGGGGAAAGAACA
GGTTTTTCAGCAGATAGTGAAGTGTCAGGTGCTCTGCCACTTAGGGGCTC
TGGTACAGCAGCCCTGAGTGTGTTGGGTCTTCCGGTATCGAATACGGTAT
CTGTTAGAGTCCTGCAAGAAAACAGAAACTGCCCAGGCATTTCTGCCAAG
AGAAAATTCATGGGCTTTATTTTCTTGGTTCCTGGAGAACTTCAACGCAA
AAAAGGAGAAAGAAGGGTTAGTAATTTAGCAGGAAGCAGCT

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAGAGGTGAGCACGGGAGTAAGAATTATTATAA
TTCTTGTCTATGTTCTATGGACAGGATAAAGAGGTTTCCTAAGGTTTCTG
ACTCTCGTTCAGCAGGAAGTGAAGATTTTTATAATAGTGCACACGATAGC
TCTTGGTTCTCTATGAATAGGGTTCTGAATTTTATTCTCTTTTCCAGCTA
CATGGCTGATGTAAAAACATATCAGGGGCCAAAGGGATGTTGCAGCCGTT
AGGAGCCAGTGCTGGTCTTGCAGAGGACCCAGGTGGGTTCCCAGAAACCA
TGTCGGACAGTTCACACCCATTGGTAACTCCAGTTCAAGAGGATCCAACA
CCCTCTTTTGGCCTCTACTGGCACCTGAGCTTACTTACATGTGCATATAC
CCACACATAGTCACACAAATAGACACATAATTTAAGCCAATTCCTTAACA
CTATATAATAAGATAAAAATTCTTATAACAATAGCAGTACTATGTAGTTG
CTTAGCTATAAACTTATACATCCTATTTGATTAAAAAGCCCTGACCTTGC
GAGATATAAATTGTAACTGTTTTTAGATGTGAGGCAATTATGACGCAGGA
NAGGCATATTATTTTCCCAAGATGCAATGAGTGTTGTTAGGACCTGCACT
AGAGTGTCCTGATTAAATATCTGCACCATAGAGTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_h10.b1 MSMg01no526_h10.b1 CHROMAT_FILE:
MSMg01no526_h10.b1 PHD_FILE: MSMg01no526_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:23 2005
         (651 letters)



>mm_chr10_117576290_117577340
          Length = 1051

 Score =  580 bits (300), Expect = e-169
 Identities = 312/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctacaactccaaacaagagcaatttgaccatccttttgacatatcaattcctct 64
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 319 gaattcctacaaccccaaacaagagcaatttgaccatccttttgacacatcaattcctct 260

                                                                       
Query: 65  tcttaaaatttatcttatgatatgggaaaaaatatacacttaatgttgtttgatgttgac 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tctaaaaatttatcttatgatatgggaaaaaatatacacttaatgttgtttgatgttgac 200

                                                                       
Query: 125 ctgatggtgtgagcacaggagagctggctagcccagtggtgtgggctgaccaactcagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctgatggtgtgagcacaggagagctggctagcccagtggtgtgggctgaccaactcagtt 140

                                                                       
Query: 185 aacatccaggcccagatccggagcgtcaagctggctcaccctaacacccaccctctgtgc 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 139 aacatccaggcccagatccggagcatcaagctggctcaccctaacacccaccctctgtgc 80

                                                                       
Query: 245 tgctagagtgcttgagcttgaaaaggcaggtcctgcagaaccaaagctacaggatctcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  tgctagagtgcttgagcttgaaaaggcaggtcctgcagaaccaaagctacaggatctcca 20

                           
Query: 305 tgactggggcaacaac 320
           ||||||||||||||||
Sbjct: 19  tgactggggcaacaac 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_h10.g1 MSMg01no526_h10.g1 CHROMAT_FILE:
MSMg01no526_h10.g1 PHD_FILE: MSMg01no526_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:24 2005
         (662 letters)



>mm_chr10_117414537_117415598
          Length = 1062

 Score = 1220 bits (631), Expect = 0.0
 Identities = 654/662 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaggtgagcacgggagtaagaattattataattcttgtctatgttctatggacagga 60
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaggtgagcacgagagtaaggattattataattcttgtctatgttctatggacagga 260

                                                                       
Query: 61  taaagaggtttcctaaggtttctgactctcgttcagcaggaagtgaagatttttataata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagaggtttcctaaggtttctgactctcgttcagcaggaagtgaagatttttataata 320

                                                                       
Query: 121 gtgcacacgatagctcttggttctctatgaatagggttctgaattttattctcttttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcacacgatagctcttggttctctatgaatagggttctgaattttattctcttttcca 380

                                                                       
Query: 181 gctacatggctgatgtaaaaacatatcaggggccaaagggatgttgcagccgttaggagc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 381 gctacatggctgatgtaaaaacatatcaggtgccaaagggatgttgcagccattaggagc 440

                                                                       
Query: 241 cagtgctggtcttgcagaggacccaggtgggttcccagaaaccatgtcggacagttcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtgctggtcttgcagaggacccaggtgggttcccagaaaccatgtcggacagttcaca 500

                                                                       
Query: 301 cccattggtaactccagttcaagaggatccaacaccctcttttggcctctactggcacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccattggtaactccagttcaagaggatccaacaccctcttttggcctctactggcacct 560

                                                                       
Query: 361 gagcttacttacatgtgcatatacccacacatagtcacacaaatagacacataatttaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcttacttacatgtgcatatacccacacatagtcacacaaatagacacataatttaag 620

                                                                       
Query: 421 ccaattccttaacactatataataagataaaaattcttataacaatagcagtactatgta 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 ccaattccttaacactatataataagataaaaattcttataacgatagcagtactatgta 680

                                                                       
Query: 481 gttgcttagctataaacttatacatcctatttgattaaaaagccctgaccttgcgagata 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttgcttagctgtaaacttatacatcctatttgattaaaaagccctgaccttgcgagata 740

                                                                       
Query: 541 taaattgtaactgtttttagatgtgaggcaattatgacgcagganaggcatattattttc 600
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 741 taaattgtaactgtttttagatgtgaggcaattatgacgcaggaaaggcatattattttc 800

                                                                       
Query: 601 ccaagatgcaatgagtgttgttaggacctgcactagagtgtcctgattaaatatctgcac 660
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 ccaagatgcaatgagtgttgttaggatctgcactagagtgtcctgattaaatatctgcac 860

             
Query: 661 ca 662
           ||
Sbjct: 861 ca 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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