BAC Information

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BAC

Clone NameMSMg01-526I09
Chromosome10 (Build37)
Map Location 93,154,305 - 93,236,026
singlet/doubletdoublet
Overlap geneNtn4
Upstream geneNedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, LOC667338
Downstream geneLOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526I09.T7 (MSMg01no526_i09.b1)MSMg01-526I09.TJ (MSMg01no526_i09.g1)
ACCAG596097AG596098
length741734
length of high quality
(start - end)		464 (63 - 526)591 (68 - 658)
definitionCHROMAT_FILE: MSMg01no526_i09.b1 PHD_FILE: MSMg01no526_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:28 2005CHROMAT_FILE: MSMg01no526_i09.g1 PHD_FILE: MSMg01no526_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,235,706 - 93,236,026)(93,154,305 - 93,154,895)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAAATGCGCGGAATTCCAGG
ACTGTTTCCTTTATGTAGAGAGACCCTGTCCCCCATCTTACCCAACCCCC
GCTCCCCAAAACAAAGAAACAGAAAAACCAAGAAAAAAAAAACATAAAAA
TGACTACTTTCATTACTATGGTAGTTTATTTTGTTTCTTAAGCGGGTTTC
ATGTATCCCAGGCTAGCGTGGAACTCATCATTATGTTATGAAGATGACCT
TGAACTCCTGACCTTCCTATCTTTTTGAGACAGAGTTTAGCTCTATAGCT
CTGGCTGTCCTGAACTCACTGTGTAGACCAGAATGTCCTCAAACTTGCAA
AGCTCCTCCTGTCCCCTTAGGGCTGAGGGGACAATCATATGCCACCACGC
ACAGCAGCTGAAGATGATTTCAACTGTGCAGGACTGTTGGCTTGCTCAAT
ATGACTTCTTTTGATACAAGTAAGAATGGGTTGGTTTCAAAAGTAAGTTT
GGAGCCACACGTGGTGGCACAGGCCTTTAATCCCAGTGCTAGGTAGGCAG
GGGAGGGCAGACCTCTGTGAGTTGGAGGATCTCTGTGGGTTCGAAGCCAG
CCTGGTCTACATAGTGAATTCCAGGAACGCCTTGCGAATTAGGGAAGATT
TGTCTCACCTCATCTTTTCTTCCAAACCAAAAATTGATATTTCTATTTCC
TCTCCCTCCAATTCATTTCCCCCAACACCCCTAGAATTAAG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTGTGGGGTTTCTTGCAAGAGTTCTCATAGAA
TACTTAAAGTGTTTACTTATAGGCCTTTAGTTATTTCACAGTGAGGTAAG
GTAAGAGGATAAAAGTGCCCGAAAGCTCGAACGCTGACGTCATAGCTGCT
GCCTCTAAGGGTGAACTATAAAGCCCGTGGAGACGTGAGGTGGACAGAGT
CTCCGAAATGCTCCTTCGCCTTTTCATGAGCACGATTTGAAGAAAGTGGA
GCGTGTATATTGGGGGTAAAAAATCGGAGCTGGAGAGATATAAAACAAGT
CTCTAACAGTTTAAACTTCTAAGACTAGAGAAGGAACAAGGCAACTCTGT
CATTTCCTTTCTTTAAAGTATCCCCTAATAGGTAAAGCATATCTCATTTT
GGAAATTTTCTCATGAACCCTTCCAGCATGGCATTCTGCAGTCCATATTG
TAGATAGCTAAGAACCTGGAATTGTGCCCATGCCTGCAAGGCCTGGTCTC
CCACTCTATTAACTTCATCCAGAAGATAAGCTGCAATGTAAGTTCTTACT
CCCACTTTCAAAGAGAATTTTTATTGACCAGACACATAAACTAAACAAAG
ATACATACACGTGTACACCCATACACACTCACACATGTGAGCACACACAC
ACAACACATGTATAGTGACACATACACTTGCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_i09.b1 MSMg01no526_i09.b1 CHROMAT_FILE:
MSMg01no526_i09.b1 PHD_FILE: MSMg01no526_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:28 2005
         (464 letters)



>mm_chr10_93235163_93236026
          Length = 864

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Minus

                                                                       
Query: 144 tcccaggctagcgtggaactcatcattatgttatgaagatgaccttgaactcctgacctt 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tcccaggctagcgtggaactcatcattatgttatgaagatgaccttgaactcctgacctt 805

                                                                       
Query: 204 cctatctttttgagacagagtttagctctatagctctggctgtcctgaactcactgtgta 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cctatctttttgagacagagtttagctctatagctctggctgtcctgaactcactgtgta 745

                                                                       
Query: 264 gaccagaatgtcctcaaacttgcaaagctcctcctgtccccttagggctgaggggacaat 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaccagaatgtcctcaaacttgcaaagctcctcctgtccccttagggctgaggggacaat 685

                                                                       
Query: 324 catatgccaccacgcacagcagctgaagatgatttcaactgtgcaggactgttggcttgc 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catatgccaccacgcacagcagctgaagatgatttcaactgtgcaggactgttggcttgc 625

                                                                       
Query: 384 tcaatatgacttcttttgatacaagtaagaatgggttggtttcaaaagtaagtttggagc 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcaatatgacttcttttgatacaagtaagaatgggttggtttcaaaagtaagtttggagc 565

                                
Query: 444 cacacgtggtggcacaggcct 464
           |||||||||||||||||||||
Sbjct: 564 cacacgtggtggcacaggcct 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_i09.g1 MSMg01no526_i09.g1 CHROMAT_FILE:
MSMg01no526_i09.g1 PHD_FILE: MSMg01no526_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:28 2005
         (591 letters)



>mm_chr10_93154105_93155095
          Length = 991

 Score = 1143 bits (591), Expect = 0.0
 Identities = 591/591 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtggggtttcttgcaagagttctcatagaatacttaaagtgtttacttataggcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtggggtttcttgcaagagttctcatagaatacttaaagtgtttacttataggcctt 260

                                                                       
Query: 61  tagttatttcacagtgaggtaaggtaagaggataaaagtgcccgaaagctcgaacgctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttatttcacagtgaggtaaggtaagaggataaaagtgcccgaaagctcgaacgctga 320

                                                                       
Query: 121 cgtcatagctgctgcctctaagggtgaactataaagcccgtggagacgtgaggtggacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtcatagctgctgcctctaagggtgaactataaagcccgtggagacgtgaggtggacag 380

                                                                       
Query: 181 agtctccgaaatgctccttcgccttttcatgagcacgatttgaagaaagtggagcgtgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctccgaaatgctccttcgccttttcatgagcacgatttgaagaaagtggagcgtgta 440

                                                                       
Query: 241 tattgggggtaaaaaatcggagctggagagatataaaacaagtctctaacagtttaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattgggggtaaaaaatcggagctggagagatataaaacaagtctctaacagtttaaact 500

                                                                       
Query: 301 tctaagactagagaaggaacaaggcaactctgtcatttcctttctttaaagtatccccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaagactagagaaggaacaaggcaactctgtcatttcctttctttaaagtatccccta 560

                                                                       
Query: 361 ataggtaaagcatatctcattttggaaattttctcatgaacccttccagcatggcattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataggtaaagcatatctcattttggaaattttctcatgaacccttccagcatggcattct 620

                                                                       
Query: 421 gcagtccatattgtagatagctaagaacctggaattgtgcccatgcctgcaaggcctggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagtccatattgtagatagctaagaacctggaattgtgcccatgcctgcaaggcctggt 680

                                                                       
Query: 481 ctcccactctattaacttcatccagaagataagctgcaatgtaagttcttactcccactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcccactctattaacttcatccagaagataagctgcaatgtaagttcttactcccactt 740

                                                              
Query: 541 tcaaagagaatttttattgaccagacacataaactaaacaaagatacatac 591
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaaagagaatttttattgaccagacacataaactaaacaaagatacatac 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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