BAC Information

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BAC

Clone NameMSMg01-526O21
Chromosome10 (Build37)
Map Location 127,165,455 - 127,166,059
singlet/doubletsinglet
Overlap geneTac2
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a
Downstream geneZbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526O21.T7 (MSMg01no526_o21.b1)MSMg01-526O21.TJ (MSMg01no526_o21.g1)
ACCAG596403AG596404
length747747
length of high quality
(start - end)		601 (37 - 637)600 (67 - 666)
definitionCHROMAT_FILE: MSMg01no526_o21.b1 PHD_FILE: MSMg01no526_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:00 2005CHROMAT_FILE: MSMg01no526_o21.g1 PHD_FILE: MSMg01no526_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCT
CTGTTTCCGTTTTACACACCTGTGCCTGCCTTCAACAGGACCAAAGGAGA
CATCACTTCCACAGAAACGTGAGCAGCTTCTTCCCCATCTGTGCTGACCA
TGTGTTCAAAGTTCCACGGGCATGGGTGGGGCCGATGGGCAATTTTGGCC
GGTCTCATCCCAGCTGGCGCAGACACTATGCCAGCTGCAGTTGCTTAGCC
AGCCTTTCTCAGTGGGAGATGGCAGGAAAAACAGGGGAAAAGCAGGTGTG
GGGGCATGGGAGACCGTCCCGCACTGGCTGTCTTGTCTGGTCACTAGGAA
CTAAGAGGCTCTCCTGGTAGCAAGGATGCTAAGCCAGCACCTGCTGTGGT
AGGGAAGGAATGAAATGTGTGTGTATTGCATGCATGCGTGCGTGTGTGGA
GGGGGGAGGGGTGAAGAGAGAAGATGGGCAGAGAGAACAGACCTGCTAGC
TGTGGAGTTCAGGCTCCTTACTAGATAAAGAAGAGCCAGATACCACGGCA
CGTTTGTAATTCCAGAACTGAGGAGGTTAACGAGGAATGGAGAATGCAAG
GCTAGCCTGGGCTACATGGCAAGTTCCAGGGCAGTGTAGCCTACATAGAC
CTGGCTTAGATGGGGGCCAGAATTGGTGATAGGAAACCAATATTCCAGTC
TCAGAAGTCTTGGCGTGTTTGTTGACAACCCTGTGCTTTTTTTTTAG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTTACAGCCCCAAGAGCATGAGAGAATCACAAG
GAAGAGAGAAGCATGTTCTGAAAGACAAGAATTCCTTTCTGACCCCAAAC
TCAAACTGCCCACCATCCCAAGGAAATGGGAAATGGGTTTTTTGAGGAAA
AGGGTGAGGCATTAGAACTCCTAATATTAGCAGGGGATTGAGGGTTCAGG
ATTGTATGTAGCTTCGGCCCTCAGAGGTCACTTACAGGATGCCAGGTATT
TCTCTCCATAGATCTCCCTGATTTCTGAGCTGGTCTGGTCCCACAGCATC
TGGATATTTGAGCATAATCTGGCACTACTGGCCATACCAGTCAGGAAGAA
GCCAGGCTCTATAATAGCCACCTTCACCCCAAAGTAGCAGAGCTCCTTCC
TGCAAGACAAACAGATGTCAAGGACTTCAGAGATCTTTCAGTGAGAACAC
TTTAATAAGAGTACAGTAGCAGGCCAACAGGAGCCTGTGATGAGGAAAGG
CCACACACTTTGGATCTGGGATGTGCAGGAAATAGGGAAGGATCTTGGGA
TAAGTGTAGCTCACTGCCCTAAAACTAGACATTCTGGTCTATGGCACTGT
GTAACATCTTTCTCCAAGTAGGACAGATGGAAAAGATCCTAGTCCTTCTC
CAAGTCACCTCTACTTCAACAGCATAGTAAGTCTCCATCTACCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_o21.b1 MSMg01no526_o21.b1 CHROMAT_FILE:
MSMg01no526_o21.b1 PHD_FILE: MSMg01no526_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:00 2005
         (601 letters)



>mm_chr10_127165251_127166259
          Length = 1009

 Score = 1108 bits (573), Expect = 0.0
 Identities = 594/605 (98%), Gaps = 8/605 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctctctgtttccgttttacacacctgtgcctgccttcaacaggaccaaaggaga 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctctgtttctgttttacacacctgtgcctgccttcaacaggaccaaaggaga 264

                                                                       
Query: 65  catcacttccacagaaacgtgagcagcttcttccccatctgtgctgaccatgtgttcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catcacttccacagaaacgtgagcagcttcttccccatctgtgctgaccatgtgttcaaa 324

                                                                       
Query: 125 gttccacgggcatgggtggggccgatgggcaattttggccggtctcatcccagctggcgc 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttccactggcatgggtggggccgatgggcaattttggccggtctcatcccagctggcgc 384

                                                                       
Query: 185 agacactatgccagctgcagttgcttagccagcctttctcagtgggagatggcaggaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agacactatgccagctgcagttgcttagccagcctttctcagtgggagatggcaggaaaa 444

                                                                       
Query: 245 acaggggaaaagcaggtgtgggggcatgggagaccgtcccgcactggctgtcttgtctgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaggggaaaagcaggtgtgggggcatgggagaccgtcccgcactggctgtcttgtctgg 504

                                                                       
Query: 305 tcactaggaactaagaggctctcctggtagcaaggatgctaagccagcacctgctgtggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcactaggaactaagaggctctcctggtagcaaggatgctaagccagcacctgctgtggt 564

                                                                       
Query: 365 agggaaggaatgaaatgtgtgtgtattgcatgcatgc----gtgcgtgtgtg----gagg 416
           |||||||||||||||||||||||||||||||||||||    |||||||||||    ||||
Sbjct: 565 agggaaggaatgaaatgtgtgtgtattgcatgcatgcatgcgtgcgtgtgtgtgtggagg 624

                                                                       
Query: 417 ggggaggggtgaagagagaagatgggcagagagaacagacctgctagctgtggagttcag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggggaggggtgaagagagaagatgggcagagagaacagacctgctagctgtggagttcag 684

                                                                       
Query: 477 gctccttactagataaagaagagccagataccacggcacgtttgtaattccagaactgag 536
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctccttaccagataaagaagagccagataccacggcacgtttgtaattccagaactgag 744

                                                                       
Query: 537 gaggttaacgaggaatggagaatgcaaggctagcctgggctacatggcaagttccagggc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaggttaacgaggaatggagaatgcaaggctagcctgggctacatggcaagttccagggc 804

                
Query: 597 agtgt 601
           |||||
Sbjct: 805 agtgt 809


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1009
Length adjustment: 10
Effective length of query: 591
Effective length of database: 999
Effective search space:   590409
Effective search space used:   590409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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