BAC Information

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BAC

Clone NameMSMg01-527D11
Chromosome10 (Build37)
Map Location 75,652,634 - 75,809,559
singlet/doubletdoublet
Overlap geneLOC100040150, Prmt2, S100b, Dip2a
Upstream geneSpecc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a
Downstream genePcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527D11.T7 (MSMg01no527_d11.b1)MSMg01-527D11.TJ (MSMg01no527_d11.g1)
ACCAG596622AG596623
length767740
length of high quality
(start - end)		628 (52 - 679)655 (80 - 734)
definitionCHROMAT_FILE: MSMg01no527_d11.b1 PHD_FILE: MSMg01no527_d11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:23 2005CHROMAT_FILE: MSMg01no527_d11.g1 PHD_FILE: MSMg01no527_d11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,808,933 - 75,809,559)(75,652,634 - 75,653,289)
sequence
NNNNNACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGGTACTGCATGCATGTGGTGCACAGGTACACACTTG
CCTGCAAAACACCCACACATAAAATAAACCTTAACAAATGTTAAATGCTC
TAAAGTGTTGTTAAATGCTGCTTAAAACGTTTTGTGTTGAATTTTTAAGT
CTTTATTGTAAACACTTTTTTGTTCCGACGTCAATAAATAAAAATTCAAC
TCTTTGAAGGACAAGGACATCATTCCCTTCCTGATTCCTGGCAGCCTAGA
GTGAGGGACTGTCAGCTAAGCAGCTCCTTCCCCAGCAACCTGCTGGAATG
CCTTCAAGTCTGGCTGTTTTCCGTACTTTACAGTCAATGTGAAAATACTC
CAGCAGCAAGCTAATCTACTACAATTGAATCCAGGAGACCTGGTCCAGGA
AACCTTGCTCTGGCCACACCCACTCCAGACAGTGCACCCGCCTCAAAAGG
CGAAGCCCAGATGCTTTTTTTTCTCGACCAGTGAACTTTCAGCAGCTATT
ATTCATTCAAGAGGACAGGGAACACGTCCTTAGAAGAAACCATTGATCAG
AGAAACATGAGAAGTGTTGACCAGCTTTCATGCAAAGCTTGTGACTGCTT
CCTATATAAACCTGTGACCTGCGGAAATAAATAGTCCCTCGTTTGCATAC
CACACCTCCTGCCTGTATAACCAGATTAGTCAGCTCAAATCAGATGTTTT
AAAATCAGTGGGGACAC

NTTTAATCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGAGTGGAGATTTAAGAC
TTTGTTTTGTTTTGTTTGTTCTTCTTCAGAAAAGACAATATTTAGGAGAC
AGAATCTGAAGGGAAAATTTTGCTACATCATTCATGGCAAAAGGTGGGCT
GTCAAGAGCATCTGTGCAGAACGGAAAGAAATGGGAGCAAATTTGTCTTT
CTATCCGGAACTTGGTCTTGAAACAATGTTAGTTCATCCCTGAGGAAAGA
GTCCTCATGCATTAGTTACTTTGTAGCAGCCCCTCCTCTTCGCACAGACA
CTCGGAATTGGGTGTTCAATAGGTGAAGCTGGAGGGTCTATTCAACTGCA
GAATTCTATCCCATTCCCTTGCATTCAAATTGTATCCATTTCACACTCTG
GTGACACCAAAGGTCTCAATTTGTTTGCAGAATGACTCAAAGGTAAAAAC
AAACAAACAGCTCATGTAAATCAGATATGAATGAGACTCACAGCATAATC
CATTCTAAAACAATCCCCTGCTGTCATCCTGGGATACTAGACATGCTATT
TCCAAAGCACAATGGTGGGGTAAGCATGGGATAGATACTCTCACTTCAAA
AGGGAAACAACACAAGAAGTAGGGAGTCACTGGTCCCTCTTGGTCTTTTT
TTTTTTTCATCTACTTTTTTTTCCAATTTTTGTATTAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_d11.b1 MSMg01no527_d11.b1 CHROMAT_FILE:
MSMg01no527_d11.b1 PHD_FILE: MSMg01no527_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:23 2005
         (628 letters)



>mm_chr10_75808656_75809685
          Length = 1030

 Score = 1154 bits (597), Expect = 0.0
 Identities = 619/627 (98%), Gaps = 2/627 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttggtactgcatgcatgtggtgcacaggtacacacttgcctgcaaaacaccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggaattctttggtactgcatgcatgtggtgcacaggtacacacttgcctgcaaaacaccc 845

                                                                       
Query: 64  acacataaaataaaccttaacaaatgttaaatgctctaaagtgttgttaaatgctgctta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 acacataaaataaaccttaacaaatgttaaatgctctaaagtgttgttaaatgctgctta 785

                                                                       
Query: 124 aaacgttttgtgttgaatttttaagtctttattgtaaacacttttttgttccgacgtcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaacgttttgtgttgaatttttaagtctttattgtaaacacttttttgttccgacgtcaa 725

                                                                       
Query: 184 taaataaaaattcaactctttgaaggacaaggacatcattcccttcctgattcctggcag 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 taaataaaaattcagctctttgaaggacaaggacatcattcccttcctgattcctggcag 665

                                                                       
Query: 244 cctagagtgagggactgtcagctaagcagctccttccccagcaacctgctggaatgcctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cctagagtgagggactgtcagctaagcagctccttccccagcaacctgctggaatgcctt 605

                                                                       
Query: 304 caagtctggctgttttccgtactttacagtcaatgtgaaaatactccagcagcaagctaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 caagtctggctgttttccgtactttacagtcaatgtgaaaatactccagcagcaagctaa 545

                                                                       
Query: 364 tctactacaattgaatccaggagacctggtccaggaaaccttgctctggccacacccact 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tctactacaattgaatccaggagacctggtccaggaaaccttgctctggccacacccact 485

                                                                       
Query: 424 ccagacagtgcacccgcctcaaaaggcgaagcccagatgctttttttt--ctcgaccagt 481
           |||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||
Sbjct: 484 ccagacagtgcacccgcctcgaaaggcgaagcccagatgcttttttttttctcgaccagt 425

                                                                       
Query: 482 gaactttcagcagctattattcattcaagaggacagggaacacgtccttagaagaaacca 541
            ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 424 aaactttcggcagctattattcattcaagaggacagggaacacttccttagaagaaacca 365

                                                                       
Query: 542 ttgatcagagaaacatgagaagtgttgaccagctttcatgcaaagcttgtgactgcttcc 601
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttgatcagagaaacgtgagaagtgttgaccagctttcatgcaaagcttgtgactgcttcc 305

                                      
Query: 602 tatataaacctgtgacctgcggaaata 628
           |||||||||||||||||||||||||||
Sbjct: 304 tatataaacctgtgacctgcggaaata 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1030
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1020
Effective search space:   630360
Effective search space used:   630360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_d11.g1 MSMg01no527_d11.g1 CHROMAT_FILE:
MSMg01no527_d11.g1 PHD_FILE: MSMg01no527_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:23 2005
         (655 letters)



>mm_chr10_75652434_75653489
          Length = 1056

 Score = 1160 bits (600), Expect = 0.0
 Identities = 642/660 (97%), Gaps = 9/660 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagagtggagatttaagacttt-gttttgttttgtttgttcttcttcagaaaagacaa 59
           ||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagagtggagatttaggagttttgttttgttttgtttgttcttcttcagaaaagacaa 260

                                                                       
Query: 60  tatttaggagacagaatctgaagggaaaattttgctacatcattcatggcaaaaggtggg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttaggagacagaatctgaagggaaaattttgctacatcattcatggcaaaaggtggg 320

                                                                       
Query: 120 ctgtcaagagcatctgtgcagaacggaaagaaatgggagcaaatttgtctttctatccgg 179
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcaagagcatctgtgcagaagggaaagaaatgggagcaaatttgtctttctatccgg 380

                                                                       
Query: 180 aacttggtcttgaaacaatgttagttcatccctgaggaaagagtcctcatgcattagtta 239
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aacttggtcttgaaacaatgttaattcatccctgagggaagagtcctcatgcattagtta 440

                                                                       
Query: 240 ctttgtagcagcccctcctcttcgcacagacactcggaattgggtgttcaataggtgaag 299
           ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgtagcggcccctcctctttgcacagacactcggaattgggtgttcaataggtgaag 500

                                                                       
Query: 300 ctggagggtctattcaactgcagaattctatcccattcccttgcattcaaattgtatcca 359
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggagggcctattcaactgcagaattctatcccattcccttgcattcaaattgtatcca 560

                                                                       
Query: 360 tttcacactctggtgacaccaaaggtctcaatttgtttgcagaatgactcaaaggtaaaa 419
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 tttcacactctggtgacaccaaaggtctcgatttgtttgcagaatgactcaaaggtaaaa 620

                                                                       
Query: 420 acaaacaaacagctcatgtaaatcagatatgaatgagactcacagcataatccattctaa 479
           |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaaca----gctcatgtaaatcagatatgaatgagactcacagcataatccattctaa 676

                                                                       
Query: 480 aacaatcccctgctgtcatcctgggatactagacatgctatttccaaagcacaatggtgg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aacaatcccctgctgtcatcctgggatactagacatgctatttccaaagcacaatggtgg 736

                                                                       
Query: 540 ggtaagcatgggatagatactctcacttcaaaagggaaacaacacaagaagtagggagtc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ggtaagcatgggatagatactctcacttcaaaagggaaacaacacaagaagtagggagtc 796

                                                                       
Query: 600 actggtccctcttggtctttttttttttt----catctacttttttttccaatttttgta 655
           |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 797 actggtccctcttggtcttttttttttttttttcatctacttttttttccaatttttgta 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space:   674670
Effective search space used:   674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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