BAC Information

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BAC

Clone NameMSMg01-528B08
Chromosome10 (Build37)
Map Location 78,445,784 - 78,446,444
singlet/doubletsinglet
Overlap genenone
Upstream gene1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353
Downstream geneOlfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528B08.T7 (MSMg01no528_b08.b1)MSMg01-528B08.TJ (MSMg01no528_b08.g1)
ACCAG597283AG597284
length746743
length of high quality
(start - end)		694 (53 - 746)660 (81 - 740)
definitionCHROMAT_FILE: MSMg01no528_b08.b1 PHD_FILE: MSMg01no528_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:35 2005CHROMAT_FILE: MSMg01no528_b08.g1 PHD_FILE: MSMg01no528_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTACCAGTCCACAAAATAGAAACAAAAGGAACACTACCT
ATCTTATTCTATGAAGCCACAATTACTCTGATACGTAAAATCACACAAAA
TCCCAACAAAGAACAAGAACTTCAGACCAATCTTGCCTATGGATATTTTT
TGGAGACCATACTGTGAGAAAGGAAGCCTTTTGCAGCTTCCCACCCTAAT
AAGCCAAATGGCCTTGTGTTAAGGAGCTGGTCGCCTCCTCCTCCCTATCT
CATGTTGGCACCAAAGACCCTAAAAAGACTGAATTATCCCTATCTCTTAC
TGACTCCCAAGACTTCTAAGGACATGAGTTATGTGCTGAGCCCAGCCTGA
AACCCAGGACAGTTAAGGAGGAATCTACATTCCGGAGATAAGACTCAGAG
TGCCTCCCGCCTGCAATCTGAATTCGGCCTTCATGTCCTCAGATGCCCAC
TTCTTTGTTCTTTGTTAATTACCCCTCAGCCCCTCCCTATTTCCCCTCGA
TGTGTGCTTATAACCTGACATTTCAGCCTAATAAACTGAGACCTTGACAG
GAATCCTCCTTGGTCTCTGTTCTTCTTTCTTGCTCTTTTCTCTTCCAGGT
TTGTGGTCCCCCTTGCACCCACGAATAACTGGGTCTGCTGGACAGGACAG
ATATTGATGCAAAAGTACTCAACAAAATTCTTGCAAACTGAATCTA

NNNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGCAAACAAATTTCCTA
ATTTTATTCATGGGCAACTCTAGTGCTATTACTGATTAGGAATCCCTGTC
TTACACTGAGATTTCTTTCCCCCAAGAGGTTATATATGCAACAGATTTAA
TTAGAAATTATTTCTTAAGGTTGAGAAATATGTATTGACTGCTGAGAAAC
AAAAGTCTCCACACATCAACGACACACAAAAACATCCAGATAAAGAAATT
AGCAGTTTAATATTTTTCTGTATAAAATATTTTGTATAAACAAATTAACT
ATATTATAGGCATTAAATATTTCTGGTCTGTATAAAAAGCAATTATACAT
CGGTAAAATTCTTTTAAAATAAGTAATAATATGACACCAAAAATGGTGGA
GATTTTATGAATAAAAGTGTGTATAGTGGAGTAAGCACACAGAGGTATAT
GTGAGGCGTTGGAGCATAAAGACTCTGTAACACAGTCTCAATAATCCATA
TCATCATCACACAGAAATACTAGTTTCTATAGATGACCAGACATTGCTGG
CAGAGAAGATGATCTAAGCAGAGACCACAAAGCCTGAGAGGCTGAGGCTC
AACCAGCATGATAGAAGGAGAAAAGCACCCCCCAAGTTGTCTTCTGTTCT
GGGAACACTACAAATATTTCTGGTTGTGATTCTAGTCTTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_b08.g1 MSMg01no528_b08.g1 CHROMAT_FILE:
MSMg01no528_b08.g1 PHD_FILE: MSMg01no528_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:35 2005
         (660 letters)



>mm_chr10_78445584_78446644
          Length = 1061

 Score = 1208 bits (625), Expect = 0.0
 Identities = 652/661 (98%), Gaps = 1/661 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagcaaacaaatttcctaattttattcatgggcaactctagtgctattactgattagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tacagcaaacaaatttcctaattttattcatgggcaactctagtgctattactgattagg 802

                                                                       
Query: 61  aatccctgtcttacactgagatttctttcccccaagaggttatatatgcaacagatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aatccctgtcttacactgagatttctttcccccaagaggttatatatgcaacagatttaa 742

                                                                       
Query: 121 ttagaaattatttcttaaggttgagaaatatgtattgactgctgagaaacaaaagtctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttagaaattatttcttaaggttgagaaatatgtattgactgctgagaaacaaaagtctcc 682

                                                                       
Query: 181 acacatcaacgacacacaaaaacatccagataaagaaattagcagtttaatatttttctg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacatcaacaacacacaaaaacatccagataaagaaattagcagtttaatatttttctg 622

                                                                       
Query: 241 tataaaatattttgtataaacaaattaactatattataggcattaaatatttctggtctg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaaatactttgtataaacaaattaactatattataggcattaaatatttctggtctg 562

                                                                       
Query: 301 tataaaaagcaattatacatcggtaaaattcttttaaaataagtaataatatgacacc-a 359
           |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |
Sbjct: 561 tataaaaagcaattatacatcactaaaattcttttaaaataagtaataatatgacaccaa 502

                                                                       
Query: 360 aaaatggtggagattttatgaataaaagtgtgtatagtggagtaagcacacagaggtata 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaatggtggagattttatgaataaaagtgtgtatagtggagtaagcacacagaggtata 442

                                                                       
Query: 420 tgtgaggcgttggagcataaagactctgtaacacagtctcaataatccatatcatcatca 479
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgaggcgttggagtataaagactctgtaacacagtctcaataatccatatcatcatca 382

                                                                       
Query: 480 cacagaaatactagtttctatagatgaccagacattgctggcagagaagatgatctaagc 539
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagaaagactagtttctatagatgaccagacattgctggcagagaagatgatctaagc 322

                                                                       
Query: 540 agagaccacaaagcctgagaggctgaggctcaaccagcatgatagaaggagaaaagcacc 599
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 agagaccacaaagcctgagaagctgaggctcaaccagcatgatacaaggagaaaagcacc 262

                                                                       
Query: 600 ccccaagttgtcttctgttctgggaacactacaaatatttctggttgtgattctagtctt 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaagttgtcttctgttctgggaacactacaaatatttctggttgtgattctagtctt 202

            
Query: 660 t 660
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space:   683150
Effective search space used:   683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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