BAC Information

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BAC

Clone NameMSMg01-529B24
Chromosome10 (Build37)
Map Location 114,680,795 - 114,681,207
singlet/doubletsinglet
Overlap geneTbc1d15
Upstream geneTrhde, 4930473D10Rik, Tph2
Downstream geneLOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529B24.T7 (MSMg01no529_b24.b1)MSMg01-529B24.TJ (MSMg01no529_b24.g1)
ACCAG598078AG598079
length773779
length of high quality
(start - end)
677 (67 - 743)589 (73 - 661)
definitionCHROMAT_FILE: MSMg01no529_b24.b1 PHD_FILE: MSMg01no529_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:57 2005CHROMAT_FILE: MSMg01no529_b24.g1 PHD_FILE: MSMg01no529_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGAGGATATTTACTGTATACAGAGTTGGGGATTTCATAAAATGTAGTA
GTTAATGCGAATCAGTCACTTTCTATTTGTCTTTTCAGGCAGACTCAACC
AATTTCTAGAAGTTAAAGTTATACCTTTACAATTAGAAAGATAAACATGA
CTGTCTTCTACATATAGTAGAATATAGTGTAGAATTTTGAGTTTTGTGGC
ATGTAATTTTCTCTCAAAAAGGTACAGAAGATGAGCAGGGCATGGTGGTG
TGTACCTGTGACTTCAGCACTGGAGGCAGAGGCAGTTTTATCCATTACCG
TGATTAAAAGTTTTCCTGGGTATAGTAGACTGGGCTGGCATGTGTGGTCT
CAAATCTGTCCAGCTCTTCTGGGATTTAATGTCTCCATTGAGAAATGAGG
TATATACTTCTAATGGGTCTGCATTTATATGTTACTTAGTCTTTTCCCCT
TACAGCTTTTGATTAGTGTGTGTGGAGAGGGACTTGGCTTCCTGCATCTG
GTGCTCTGTGTGCTGCTTGTACCTTGGTAGGCATGACCTTTAGTTGGGGA
GATTTTCTTGAAAATGATTTCTGTGCTTTTGACTTCCTTTCCTTTCCTTT
CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT
CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCCCC
TTCCCTTTTCCCTTTTCCTTCCN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATTCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGCTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
CGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAA
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAAAACCTAGGATACCCAAGATATTAGATACAATTTCCTAA
ACACTTGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACCCTATGCCCC
CTCCTTAGAAGTGGGAACAAAACACCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_b24.b1 MSMg01no529_b24.b1 CHROMAT_FILE:
MSMg01no529_b24.b1 PHD_FILE: MSMg01no529_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:57 2005
         (677 letters)



>mm_chr10_114680795_114681867
          Length = 1073

 Score =  772 bits (399), Expect = 0.0
 Identities = 411/417 (98%), Gaps = 4/417 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatacagagttggggatttcataaaatgtagtagttaatgcgaatcagtcactttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtatacagagttggggatttcataaaatgtagtagttaatgcgaatcagtcactttctat 354

                                                                       
Query: 61  ttgtcttttcaggcagactcaaccaatttctagaagttaaagttatacctttacaattag 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  
Sbjct: 353 ttgtcttttcaggcagactcaaccaatttctagaagttaaagttacacctttacaatt-- 296

                                                                       
Query: 121 aaagataaacatgactgtcttctacatatagtagaatatagtgtagaattttgagttttg 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 --agataaacatgactgtcttctacatatagtagaatatagtgtagaattttgagttttg 238

                                                                       
Query: 181 tggcatgtaattttctctcaaaaaggtacagaagatgagcagggcatggtggtgtgtacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 237 tggcatgtaattttctctcaaaaaggtacagaagatgagcagggcatggtggtgtttacc 178

                                                                       
Query: 241 tgtgacttcagcactggaggcagaggcagttttatccattaccgtgattaaaagttttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgtgacttcagcactggaggcagaggcagttttatccattaccgtgattaaaagttttcc 118

                                                                       
Query: 301 tgggtatagtagactgggctggcatgtgtggtctcaaatctgtccagctcttctgggatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tgggtatagtagactgggctggcatgtgtggtctcaaatctgtccagctcttctgggatt 58

                                                                    
Query: 361 taatgtctccattgagaaatgaggtatatacttctaatgggtctgcatttatatgtt 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  taatgtctccattgagaaatgaggtatatacttctaatgggtctgcatttatatgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1073
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1063
Effective search space:   709021
Effective search space used:   709021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)