BAC Information

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BAC

Clone NameMSMg01-529C21
Chromosome10 (Build37)
Map Location 72,186,985 - 72,187,466
singlet/doubletsinglet
Overlap genenone
Upstream geneEG327767, 1700049L16Rik, LOC100040505, Zwint
Downstream geneLOC432471, LOC544705, LOC100039981, LOC623191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529C21.T7 (MSMg01no529_c21.b1)MSMg01-529C21.TJ (MSMg01no529_c21.g1)
ACCAG598120AG598121
length768754
length of high quality
(start - end)
689 (70 - 758)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no529_c21.b1 PHD_FILE: MSMg01no529_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:02 2005CHROMAT_FILE: MSMg01no529_c21.g1 PHD_FILE: MSMg01no529_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTCAGTATCTGTTGTAAGAATGGCTTGGTGGTCATATATTT
CTTTAGTCTGATTTTATCATGGGTACTTTTTCTTCCACCTTCAGTTAACA
CAGAAAGCTCTGATGAGTATAATAGATTAAGTTGGCAATAAAGCCTTATA
GTGCTTGAAAGATGTCAGTCACAGCAGCAAGTCCACTCTCTGGTTACAGA
GAAACTTCCTGGGCAGAAAAGTTCAAGTAGTCACACCCGTACCTACACAT
AGAGTTCCTTGATCACAATCCTTCTCACTCTTCTTTCTCATCTCCATGCT
TCCTCATCCACCAAATTCCTTCTTCACAAATCTCCCTCCTACTTTCATGT
CGTTTTAGTTATGTTAGTATAGTATTTAGTTAGGGTTGTCTTCATGATTG
AATTGCAGTTATTTGTTTACGTGGGGCATTATAGCAGTGGCCACACCACC
GGTGAATGGTGTCCTTCTCCCCACTACCTTTGCCTATGGGAGAGGTAGAG
CACAAGTTCATCAGCATTCCAACACATAAGTTTTAGAGATTATATTTTTG
ATCATAATAACAGATATTCAGAGAATTAGAGTAAATTTTAGTGTAAACAA
AATGTATTGCAGTATTATTTTAAGGTCAAAACAAAAGAACATGGTAGCTA
GAAATATATGAGAGTTAACAAAAACTATGTTAACACAATTAACATTAAAG
TTCTAACATTGTATCATN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATC
AAAAACTCAGGTGACAGGAGATGCTGGCGAGGATGTGGAGAAAGGAGAAC
ACTCCTCCATTATTGGAGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAATATTGTACATAGTACTACCGGAGGATCCA
GCAATGTGTATGCAATGGTGTCAGCATTTGGAAGCTGATTATGGGGTGGA
TCCCTGGATATGGCAGCCCCTACATGGTCCATCCTTTCATCTCAGCTCCA
AACTTTGTCTCTGTAACTTCTTCCAAGGATGTTTTGTTCCCACTTCTAAG
GAGGGGCATAGTGTCTACACTTCAGTCTTCATTTTTCTTGAGTTGCATGT
GTTTAGGAAATTGTATCTTATATCTTGGGTATCCTAGGTTTTGGGCTAAT
ATCCACTTAACATTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTT
ACCTTCCCTCAAGATGATGCCCTCCAGGCTCATCCATTTGGGTAAGAATT
TCTTAAATTCTTTCTTTGTAATTGCGGAGTAATACTCCTTGGGTAGATTG
CCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_c21.b1 MSMg01no529_c21.b1 CHROMAT_FILE:
MSMg01no529_c21.b1 PHD_FILE: MSMg01no529_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:02 2005
         (689 letters)



>mm_chr10_72186573_72187662
          Length = 1090

 Score =  828 bits (428), Expect = 0.0
 Identities = 467/482 (96%), Gaps = 5/482 (1%)
 Strand = Plus / Plus

                                                                       
Query: 213 cacacccgtacctacacatagagttccttgatcacaatccttctcactcttctttctcat 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cacacccgtacctacacatagagttccttgatcacaatccttctcactcttctttctcat 472

                                                                       
Query: 273 ctccatgcttcctcatccaccaaattccttcttcacaaatctccctcctactttcatgtc 332
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 473 ctccatgcttcctcatccaccaaattccttcttcacaaatctccctccttctttcatgtc 532

                                                                       
Query: 333 gttttagttatgttagtatagtatttagttagggttgtcttcatgattgaattgcagtta 392
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gttttagttatataagtatagtatttagttagggttgtcttcatgattgaattgcagtta 592

                                                                       
Query: 393 tttgtttacgtggggcattatagcagtggccacaccaccggtgaatggtgtccttctccc 452
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tttgtttacctggggcattatagcagtggccacaccaccggtgaatggtgtccttctccc 652

                                                                       
Query: 453 cactacctttgcctatgggagaggtagagcacaagttcatcagcattccaacacataagt 512
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 653 cactacctttgcctatgggagaggttgagcacaagttcatcagaattccaacacataagt 712

                                                                       
Query: 513 tttagagattatatttttgatcataataacagatattcagagaattagagtaaattttag 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tttagagattatatttttgatcataataacagatattcagagaattagagtaaattttag 772

                                                                       
Query: 573 tgtaaacaaaatgtattgcagtattattttaaggtcaaaacaaaa-gaacatggtagcta 631
           |||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| |
Sbjct: 773 tgtaaacaaaatgtattgcagtgttattttaaggtcaaaaaaaaaagaacatggtagcaa 832

                                                                       
Query: 632 gaaatatatgagagttaacaaaaactatgttaacacaattaacattaaa----gttctaa 687
           ||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||
Sbjct: 833 gaaatatatgagagttaacaaaaactatgttaacacaattaacgttaaataaagttctaa 892

             
Query: 688 ca 689
           ||
Sbjct: 893 ca 894


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space:   733320
Effective search space used:   733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)