BAC Information

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BAC

Clone NameMSMg01-529E23
Chromosome10 (Build37)
Map Location 96,655,710 - 96,656,373
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik
Downstream geneEG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529E23.T7 (MSMg01no529_e23.b1)MSMg01-529E23.TJ (MSMg01no529_e23.g1)
ACCAG598220AG598221
length763764
length of high quality
(start - end)
708 (45 - 752)670 (73 - 742)
definitionCHROMAT_FILE: MSMg01no529_e23.b1 PHD_FILE: MSMg01no529_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:13 2005CHROMAT_FILE: MSMg01no529_e23.g1 PHD_FILE: MSMg01no529_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACATGACTCCCTGAGCTCTACCTGATATTTGGTTGTAAATCTTGA
CATCTGTTTTCATCAGCTACTGGATGAAGCCTCTCCGAGGACAGTTATGC
TAGGCTCCTGACTGCAAGTATATCACAGTATCATTAATAGTGTCAGGGAT
TGGCTATCTCCCATGAGATGGGTCTCAAGTTGGACTGGTCATTGGTTGGC
CATTCCTTCAATCTCTCCTCCATCTTTATCCCTGTACTTCTTGTAGTTAT
GACAAATTTTGGGTTGAAAGTCTTATGACTAGGTTGATATCCCCCTCCCT
CCACTGAAAGTCCTGCCTTGCTACAGGAGGTGGCCACTTCAGTCTCCATA
TCCCCAGCTGCTAGGAGTCTCCCCCACCCTCCATAGACTCCCAGGAGCTT
TCCCAGTCTCAGGTCCCAGGCTAGTCCCAGAGATGCACTTGCCCCACCAA
TTTCCAGTCTCTCTTCCATTCCCATTCTCTTTTTCAACCCTCTCCTGTCC
CTACCTCTTTCCATACCTGATAACTATCCCCATTTTCCTCCTTCAGCTCC
CTTCCACCAAGTTTCCTCCCTTCATACAATTCCAATGTGTACTTTATTTC
CCCTTCTGATTGAGTTTCAAGCCACCTCCTTTGGGTCCTTCTTATTACTT
AGTTTATTTGGGTCTGTGAATTGTAGCATGGNTATCCTGTTCTTTATGGC
TAANGCCCACTTA
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGAAAAAAAAATCCAGGGCTTGGAAAC
ACCCAGCATTTAGAGAAAAGGAGACTACATGGATAAGAACTCATGGTTCT
GCTATCAGCTTTCGCTGAAGGGAGGTTCTGACTCCTGAGTTGCAAGTGTG
CACAGCGAGACAGACAGTGGAGGAGTTAGAATGCTTGCTACTTACAGGTT
AAAGAGACAAACAGATAAAGCAGATGTCCTTTAAAAACAAAACCTGCTGT
TCCCTGATGCTGAGATAAGTGAGAGCTAAAAGTTCAGGAGGAGAAAGAGC
TCTTGTAAGAAGGCCAGCCCCGCAGATGGAAGCTTGAAAATGTTACATTC
TAGCAAAGGGAATATGGGGGCATAAGAGGCATACAGGAAACAGACCAGTC
TTCGCCTCCACTGGGCTAGAGTCATCCACTTGATAGCTATCTGCTCACCA
GATACAAATATATCTCTAATAAGATAAAGAATGGTAAACATAACATCATT
TTATACATAATGTTCAGAGTTTCATAAGGAAAAAAGGTCAGGTATGACAC
AAAATAAAACAGTAAAAACAACAACAACAGAGAAACCAAAATATAAGAGA
AAAAAATCAAAGGGAGAAGCTGGTAGAAGATACAAATACGGATAGAGATT
CAGGCTTAGGGGAAACAATTATTCTGGAACCAAAGAAATGTAAGAAAAGA
TTAAAAGTCCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_e23.g1 MSMg01no529_e23.g1 CHROMAT_FILE:
MSMg01no529_e23.g1 PHD_FILE: MSMg01no529_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:13 2005
         (670 letters)



>mm_chr10_96655509_96656575
          Length = 1067

 Score = 1135 bits (587), Expect = 0.0
 Identities = 647/669 (96%), Gaps = 7/669 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   agaaaaaaaaatccagggcttggaaacacccagcatttagagaaaaggagactacatgga 61
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 agaaaaaaaaat-cagggcttggaaacacccagcatttagagaaaaggagactacatgga 807

                                                                       
Query: 62  taagaactcatggttctgctatcagctttcgctgaagggaggttctgactcctgagttgc 121
           ||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 806 taagagctcatgcttctgctatcagctttctctgaagggaggttctgactcctgagttgc 747

                                                                       
Query: 122 aagtgtgcacagcgagacagacagtggaggagttagaatgcttgctacttacaggttaaa 181
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 746 aagtgtgcacagcgagacagacagtggaggaattagaatgcttgctacttacaggttaaa 687

                                                                       
Query: 182 gagacaaacagataaagcagatgtcctttaaaaacaaaacctgctgttccctgatgct-- 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  
Sbjct: 686 gagacaaacagataaagcagatgtcctttaaaaacaaaacctgc-gttccctgatgctga 628

                                                                       
Query: 240 gagataagtgagagctaaaagttcaggaggagaaagagctcttgtaagaaggccagcccc 299
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 627 gagataaatgagagctaaaagttcaggaggagaaagagctcttgtaagaaggtcagcccc 568

                                                                       
Query: 300 gcagatggaagcttgaaaatgttacattctagcaaagggaatatgggggcataagaggca 359
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 567 gcagatgggagcttgaaaatgttacattccagcaaagggaatatgggggcataagaggca 508

                                                                       
Query: 360 tacaggaaacagaccagtcttcgcctccactgggctagagtcatccacttgatagctatc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tacaggaaacagaccagtcttcgcctccactgggctagagtcatccacttgatagctatc 448

                                                                       
Query: 420 tgctcaccagatacaaatatatctctaataagataaagaatggtaaacataacatcattt 479
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 447 tgctcaccagatacaaatatatctcttataggataaagaatggtaaacataacatcattt 388

                                                                       
Query: 480 tatacataatgttcagagtttcataaggaaaaaaggtcaggtatgacacaaaataaaaca 539
           ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 387 tatacataatgttcagagtttcataaggaaaaaaggtcaagtatgacacgaaataaaaca 328

                                                                       
Query: 540 gtaaaaacaacaacaacagagaaaccaaaatataagagaaaaaaatcaaagggagaagct 599
           |||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 327 gtaaaaacaacaaca---gagaaaccaaaatataagagaaaaaaatcaaagagagaagct 271

                                                                       
Query: 600 ggtagaagatacaaatacggatagagattcaggcttaggggaaacaattattctggaacc 659
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agtagaagatacaaatacggacagagattcaggcttaggggaaacaattattctggaacc 211

                    
Query: 660 aaagaaatg 668
           |||||||||
Sbjct: 210 aaagaaatg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1067
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1057
Effective search space:   697620
Effective search space used:   697620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)