BAC Information

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BAC

Clone NameMSMg01-529J11
Chromosome10 (Build37)
Map Location 95,027,380 - 95,027,757
singlet/doubletsinglet
Overlap genenone
Upstream geneTmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4
Downstream geneEG628119, Eea1, EG432491, LOC667380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529J11.T7 (MSMg01no529_j11.b1)MSMg01-529J11.TJ (MSMg01no529_j11.g1)
ACCAG598435AG598436
length747870
length of high quality
(start - end)
435 (74 - 508)169 (82 - 250)
definitionCHROMAT_FILE: MSMg01no529_j11.b1 PHD_FILE: MSMg01no529_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:38 2005CHROMAT_FILE: MSMg01no529_j11.g1 PHD_FILE: MSMg01no529_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTTTTTAAATTGCGGTCGCTTATACAACTCCTTATTTCCAGAGGAT
CCGCGGAATTCCAGTGATTTCCGGTCTCCTACTTTTTTTCTTTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTTTTTTTTTTTTTTGGTTTATGGTTTTAGGTTTTCGAG
ACAGAGTTTCCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGA
CCAGGTTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGGCTCCCAAGTGC
TGGGATTAAAGGCGTGCACCACCACTGCCCACCGGTCTCCTACGTTCTAT
CTTGGCTCTTCAATAGCATTGAAATATTGGGAGTTGTTCCAAGTGCCTAA
AACTGTAAGCTTCCAGACAACAAACATCCCACTGATTTACTGCTATGGCC
TTACTTAGAATGAGATACACACAGCATAACAGCCATAACCAGCGTTCATG
AATGCACTCTGGAGGGTCAGCGGAGGTGGGGATGCCACTTCACAGACAAC
TGGCTATTGTCCACTTCAAAGCCTCAGCTGACTCTTCAAGAGCACATAAT
AGCACTCTCATCGAAACAGAGGAAGTGGGGAGAGGGAGAATGAAGGGGAT
AGGAGAGAGAGAACTCTATGTAATTTTTCCTTCCTAGCCTTTTCCAGGTT
TGTTTACCGGCTATGTTTTGTTGTCCTTGTCATTGGTTCGGGTTACT
NTTCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAATACAATCTAGC
CACGCCTTTAATTCCAGCACTTGGGAGGAAGAGGCAGGTGGATCCAGACT
AGCCTGGTCTACAGAGTGGTTTCCAGGACAGCCAGGACTACAACAGAGAA
ACCTTGTCTAGAGAGAGGAGTGGGGAGGGAAGGAAGGAGGGAGGGAGGTG
ATTTTTTTTTTTTNTNGCTTTTTTTTTTTTTTTTTGTTTNTGCCTCTTCT
TCGCTCTCGCTCTTTTTTCTTGCCTCTTTCTTTTCGCTTTTCTCTTTGTT
TCTTTTTGCCCTTTTCTTTTTTTTTCCCGGTTCGTGTCCGGTCCCCCCCC
CCTTTTTTTTTCTCTTTTTTTCTTTTTTTTTCCCCCCCTCTCTTCCTTTT
TTCCTTTTTTTTCTTTTTTCCCTTTTTTTGTTTGTCCGTTTTTTCCTTTT
CTCCTTTCCCCCTGTTTTTGTCCTCTGTTCTTTTTTTTTTCTTTGTTTTC
ATTTGCTCTTTTTCTCTTCGTTTTCGCTCTTTTTCTTGTTTTTCCCTTCT
TTGTCTCCCTTTATTTTTTCCGTCATCATCTTCTTTTCTTTGTTTTTTCT
GTTTTTTCAATTTTCGCGTCACCCACCGTATCTATGCTTCGCCGAATTTT
TTTTATCATTTTCTCTATCTTTTCCCTACTTGTTTGTTCTTCCGTATATT
AGCGTTGGTGTAGATTTATCTTAGATTTTTACCCACTACCACTCTTGTGT
TTTGTTCTTCCTCTTTTTTTTCTCACTCGTACTTCTATGATGCTTTGTTT
TTACCTTTTCTTTTCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_j11.b1 MSMg01no529_j11.b1 CHROMAT_FILE:
MSMg01no529_j11.b1 PHD_FILE: MSMg01no529_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:38 2005
         (435 letters)



>mm_chr10_95026923_95027757
          Length = 835

 Score =  692 bits (358), Expect = 0.0
 Identities = 373/378 (98%)
 Strand = Plus / Minus

                                                                       
Query: 58  tctttctttctttctttctttctttctttcttttttttttttttttggtttatggtttta 117
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 835 tctttctttctttctttctttctttcttttttttttttttttttttggtttatggtttta 776

                                                                       
Query: 118 ggttttcgagacagagtttcctctgtatagccctggctgtcctggaactcactctgtaga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ggttttcgagacagagtttcctctgtatagccctggctgtcctggaactcactctgtaga 716

                                                                       
Query: 178 ccaggttggccttgaactcagaaatctgcctgcctctggctcccaagtgctgggattaaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ccaggttggccttgaactcagaaatctgcctgcctctggctcccaagtgctgggattaaa 656

                                                                       
Query: 238 ggcgtgcaccaccactgcccaccggtctcctacgttctatcttggctcttcaatagcatt 297
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 655 ggcgtgcaccaccactgcccaccggtctcctactttctatcttggctcttcaatagcact 596

                                                                       
Query: 298 gaaatattgggagttgttccaagtgcctaaaactgtaagcttccagacaacaaacatccc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaaatattgggagttgttccaagtgcctaaaactgtaagcttccagacaacaaacatccc 536

                                                                       
Query: 358 actgatttactgctatggccttacttagaatgagatacacacagcataacagccataacc 417
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 535 actgatttactgctatggccttacttagaatgagatacacacagaataacagccataacc 476

                             
Query: 418 agcgttcatgaatgcact 435
           || |||||||||||||||
Sbjct: 475 agtgttcatgaatgcact 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)