Query= MSMg01no530_b13.b1 MSMg01no530_b13.b1 CHROMAT_FILE:
MSMg01no530_b13.b1 PHD_FILE: MSMg01no530_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:18 2005
(706 letters)
>mm_chr10_110274201_110275306
Length = 1106
Score = 1348 bits (697), Expect = 0.0
Identities = 700/701 (99%)
Strand = Plus / Plus
Query: 6 gaattcctgggtctttctctttattttctttcccaaacatttaaggatgcatcagataac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcctgggtctttctctttattttctttcccaaacatttaaggatgcatcagataac 265
Query: 66 tattctatcttaatttcaggacaacaaagaaattctctgcactataacctactctttcct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tattctatcttaatttcaggacaacaaagaaattctctgcactataacctactctttcct 325
Query: 126 gtgatgaggagtaactgtggcacccagtcctcatgcattaattactttaatatacattaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtgatgaggagtaactgtggcacccagtcctcatgcattaattactttaatatacattaa 385
Query: 186 atatgaaaatataaattgaatattctctaccatctagaattgaattatacactggtggtt 245
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 386 atatgaaaatataaattgaatattctctaccatctagaattgagttatacactggtggtt 445
Query: 246 tgaatgagaatggccccatacactcatatatttgaatgcttaacctccaggaagtgggac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgaatgagaatggccccatacactcatatatttgaatgcttaacctccaggaagtgggac 505
Query: 306 tatttgaaggtgtggccctgattggagtaggtgtggctttgttagaggaagagtttcact 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tatttgaaggtgtggccctgattggagtaggtgtggctttgttagaggaagagtttcact 565
Query: 366 ggggggtgggctttgaggtttcaaatgctcaagccagtatctgtggatctgaatattgaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggggggtgggctttgaggtttcaaatgctcaagccagtatctgtggatctgaatattgaa 625
Query: 426 ctctcagctactttccagcaccatgtctgcctgcatgccacaatactcactgctatgaca 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctctcagctactttccagcaccatgtctgcctgcatgccacaatactcactgctatgaca 685
Query: 486 ataacagactaaacctcaaactgtaaaccaaccccaatgaaatgctttccttttaaagag 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ataacagactaaacctcaaactgtaaaccaaccccaatgaaatgctttccttttaaagag 745
Query: 546 ttgccgtggtcatggtgtctcttcacaacaacagaacattcattaaaacatacatattaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttgccgtggtcatggtgtctcttcacaacaacagaacattcattaaaacatacatattaa 805
Query: 606 ggaagaatttaacatgttctacataaggaatagggcaacatgaggtaagctcccagctcc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggaagaatttaacatgttctacataaggaatagggcaacatgaggtaagctcccagctcc 865
Query: 666 cttgtttcttatctatgacttccaccaacttcttgggcttc 706
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cttgtttcttatctatgacttccaccaacttcttgggcttc 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_b13.g1 MSMg01no530_b13.g1 CHROMAT_FILE:
MSMg01no530_b13.g1 PHD_FILE: MSMg01no530_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:18 2005
(581 letters)
>mm_chr10_110445246_110446228
Length = 983
Score = 868 bits (449), Expect = 0.0
Identities = 549/619 (88%), Gaps = 63/619 (10%)
Strand = Plus / Minus
Query: 1 aggtcgtgttttgaggttgagaatggtgtccagatccgtggtgttcaccacagggtgaat 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 773 aggtcgtgttttgaggttgagaatggtgtccagatccgtggtgttc----------gaat 724
Query: 61 aaacgtggttactttgcattcgattgattttatttcttcctggcttttgtgtc----ttt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 723 aaacgtggttactttgcattcgattgattttatttcttcctggcttttgtgtcttgtttt 664
Query: 117 tttttttttaattgtgaatacaaaggaccaccttcgtattattaataccccattatctct 176
||||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||
Sbjct: 663 tttttttttaattgtaaatacaaaggaccactttcg---tattaataccctattatctct 607
Query: 177 taacttgat--t----------------------acacacacacacacacat-------- 204
||||||||| | ||||||||||||||||||
Sbjct: 606 taacttgatcatacacacacacacacacacacacacacacacacacacacatacacacac 547
Query: 205 acacacaaactgagacagtttcttagaaatatatgctgagactagtctcattagaaaagg 264
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 546 acacacaaactgagacagtttcttagaaatatatgctgagacaagtctcattagaaaaga 487
Query: 265 ctgttttgagtttctg--acagctatgcagtaagaagaaactttctgaaaacttaaagtg 322
|||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 486 ctgttttgggtttctgacacagctatgcagtaagaagaaactttctgaaaaattaaagtg 427
Query: 323 gcaataaacttagaattggcattagagagatttcttttggtttacacaaggtcctaaaat 382
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 426 gcaataaacttagaa------------agatttcttttggtttacacaaggtcctaaaat 379
Query: 383 atgtccagaaagttttcagatgttgtgttgtatttggggttaaggaatatttctgctcat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgtccagaaagttttcagatgttgtgttgtatttggggttaaggaatatttctgctcat 319
Query: 443 cggttcctgtgggtatatttcaagcacttaaaagtgtcttatgtattttaatgtactgtg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cggttcctgtgggtatatttcaagcacttaaaagtgtcttatgtattttaatgtactgtg 259
Query: 503 gcactcagtggatgtttggaggtagagagagacggattaggagctcaaagctatctttga 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gcactcagtggatgtttggaggtagagagagacggattaggagctcaaagctatctttga 199
Query: 563 gagtataatgtgttggaag 581
|||||||||||||||||||
Sbjct: 198 gagtataatgtgttggaag 180
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 983
Length adjustment: 10
Effective length of query: 571
Effective length of database: 973
Effective search space: 555583
Effective search space used: 555583
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
