BAC Information

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BAC

Clone NameMSMg01-530P09
Chromosome10 (Build37)
Map Location 56,714,951 - 56,715,560
singlet/doubletsinglet
Overlap genenone
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355, LOC100042628, EG629739
Downstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530P09.T7 (MSMg01no530_p09.b1)MSMg01-530P09.TJ (MSMg01no530_p09.g1)
ACCAG599476AG599477
length757755
length of high quality
(start - end)
650 (53 - 702)610 (80 - 689)
definitionCHROMAT_FILE: MSMg01no530_p09.b1 PHD_FILE: MSMg01no530_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:27 2005CHROMAT_FILE: MSMg01no530_p09.g1 PHD_FILE: MSMg01no530_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTATTTTGCTCTGTGCCCTGATTTTTAATTGGGTTAT
TTGATATATTGGATTTTAACTTCTGGAGTTCTTCATACATCTTGGATATT
AGCCCTCTGTTGGATGTAGGGTTAGTGAAGATCTTTTCTAAATTTGTAGG
CTACCATTTTGTCCTATTGTCAGTGTCCTTTGCTTTGCAGAAGCTTTTCA
GTTTCATGAGGTCCCATTTATTAAATGTTGATCTTAATGCCTCAACCATT
AGTGTTCTGTTCAAGAAATTTTCTTCTATACCAATGCAGGCAAGACTCTT
TCCCACATCCTCTTCCATTAGTTTTAGTGTATCTGGTTTTATGTTGAGTA
TCTTGATCCACTGGGATTTGATCTTTGTAGAGGGTGGCAAATATGGATCT
ATTTGCATTTTTCTACATGCAAACACCAGTTAGATCAGGGCCATTTATTG
AAGATGCTTTCTTTTTTTATTGTATGGTTTTGTCCGCTTTGACGAAAAAC
AACTGTCCATAGGTATGTGGGCTTATTTCTGGCTCTTTGATTCAATTCCA
TTGATCAGCCTGTCTGTTTCTACATCAATACCATGGAGGTTTTTAAATAC
TGTTGCTCTGAGAATAATTTCTTGATAAGCCTAGTAGAAGTGGACATAAG
TGTTGAAGAAATTGCANGTTTTGAGAACATATTGAAAAATGTTTTACACT
GAAAACA
NTTTTTCTAAGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGTCCCTGGGTGTTGGCA
GCCTTTGTGAGCTTCAGCCTTTGCCTATGTGTAGACCACGCGAAAGCCGA
TTACTGGCAGAACTAGTTAGATGTCTTTTAAAGTGATGGGATTCAAGAAC
TGACTGGTTCATTTTATGGTACTTGCATACTCATAAGTCAATGTCTCTTG
ACTCATTCTATGTCTTTTTGAAGCCCAGGGGCCTTTGCTAGGTATCATTT
GAATATGATTCACTCAATAGTTTCAGACATTCTGGGAAACATCAAGGGGA
TAGGACTTCAAACTAACATTCCAATCTAATACCATGCATCTCGGGTATTA
GCTAAAGTTTGTTTTATGGAGTTATGAGCTAACTGTCTTTCTTTTATACC
CACATATGTACATGTGGATTAAACCATAATGGAATTGGACAAGTTTAAAG
TGTGTCTTCAGGAAGTAAATGAACTCTCTCTCTCTCTCTGTATGTATATG
CATTTGCACACGTGTGCTCATACAGTTTTAATTTAGCTATTTCAATTAGC
CACTGTGAAAGGAATGATAGTTTTGAAACTTACTGAAAGAAAACCTGAGC
TACTAAGAGAAAAGACATTTCCTAGTTTATGTAAATTTCAGCACAATAAT
GTTCTGGTTTACAGAAGTGGGTGGGTGCTGAGCAAAAGTAGGCGCCATGT
TTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_p09.g1 MSMg01no530_p09.g1 CHROMAT_FILE:
MSMg01no530_p09.g1 PHD_FILE: MSMg01no530_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:27 2005
         (610 letters)



>mm_chr10_56714751_56715760
          Length = 1010

 Score = 1133 bits (586), Expect = 0.0
 Identities = 604/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggtccctgggtgttggcagcctttgtgagcttcagcctttgcctatgtgtagaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggtccctgggtgttggcagcctttgtgagcttcagcctttgcctatgtgtagaccac 260

                                                                       
Query: 61  gcgaaagccgattactggcagaactagttagatgtcttttaaagtgatgggattcaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgaaagccgattactggcagaactagttagatgtcttttaaagtgatgggattcaagaa 320

                                                                       
Query: 121 ctgactggttcattttatggtacttgcatactcataagtcaatgtctcttgactcattct 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ctgactggttcattttatggtacttgcacactcataagtcaatgtctcttgactcattct 380

                                                                       
Query: 181 atgtctttttgaagcccaggggcctttgctaggtatcatttgaatatgattcactcaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtctttttgaagcccaggggcctttgctaggtatcatttgaatatgattcactcaata 440

                                                                       
Query: 241 gtttcagacattctgggaaacatcaaggggataggacttcaaactaacattccaatctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttcagacattctgggaaacatcaaggggataggacttcaaactaacattccaatctaa 500

                                                                       
Query: 301 taccatgcatctcgggtattagctaaagtttgttttatggagttatgagctaactgtctt 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taccatgcatctcgggtactagctaaagtttgttttatggagttatgagctaactgtctt 560

                                                                       
Query: 361 tcttttatacccacatatgtacatgtggattaaaccataatggaattggacaagtttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttttatacccacatatgtacatgtggattaaaccataatggaattggacaagtttaaa 620

                                                                       
Query: 421 gtgtgtcttcaggaagtaaatgaactctctctctctctctgtatgtatatgcatttgcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgtgtcttcaggaagtaaatgaactctctctctctctctgtatgtatatgcatttgcac 680

                                                                       
Query: 481 acgtgtgctcatacagttttaatttagctatttcaattagccactgtgaaaggaatgata 540
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 681 acgtgtgctcatatagttttaatttagctattgcaattagccactgtgaaagggatgata 740

                                                                       
Query: 541 gttttgaaacttactgaaagaaaacctgagctactaagagaaaagacatttcctagttta 600
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 gttttgaaacttactgaaagaaaacctgagctactaagaggaaagacatttcctagttta 800

                     
Query: 601 tgtaaatttc 610
           ||||||||||
Sbjct: 801 tgtaaatttc 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)