BAC Information

Click to search

BAC

Clone NameMSMg01-532E08
Chromosome10 (Build37)
Map Location 39,665,957 - 39,666,526
singlet/doubletsinglet
Overlap genenone
Upstream geneLama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994
Downstream geneLOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532E08.T7 (MSMg01no532_e08.b1)MSMg01-532E08.TJ (MSMg01no532_e08.g1)
ACCAG600471AG600472
length749747
length of high quality
(start - end)		570 (72 - 641)589 (84 - 672)
definitionCHROMAT_FILE: MSMg01no532_e08.b1 PHD_FILE: MSMg01no532_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:09 2005CHROMAT_FILE: MSMg01no532_e08.g1 PHD_FILE: MSMg01no532_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTTTGCATTCTCTGCAAGTTAAGAGACAATAAAATACTGCCTA
ATGACCCTTGCCAAATCAGGAGCCTGGTAACAAGAAATTAAGATCGCCAA
ACCATGAAATACTTAAGTAACACGCTGGAATTACAGAACATTTCAAAACA
TCTTAGCATTTCCTACACATGGACCTCAGAACATAAATCCGCAGAGACCA
CTGAAACTTCACTGATGATCTATCTTCTCTGGTTGGCCTAGTGAGAGGTG
TGGATTCAAGGAAACCAAGGGCTTAAGATCTGAAGACTGGTAGAGTGTTT
GGCTAACCCAGGCAGAGTTTAACCCTCCAATTTCCCACTTCCCCAAGGAA
CAGAGAATCAGTAAAAACTCTGTTTTCTCTCTTAGCACCTTTTTCCTTGC
TTCTGACAAGGTACTTGCTATAGCTTGAATATGAAATGACCCACCCCTGC
CCCCAATGGGCTTACCTGTTTCAACATTTGGTTCCTGTCTGGGGGCAATG
TTTTAGAGGATTATGGAACCTTTAGGAAGTAGGGTTCCTCTGGAGGAAGT
GGGGCTCCCTGGAGGAAGTGAGGCTCCCTGGAGGAAGTGCATTAGTAGGC
ACAAGGTGTGAAGATTTTGCACCTGGCCACACCTTTGTTCTTCTCGCCAC
ATCCTGTTCTATCAAGATGTGAAGGAATGAGAATCCCAGCCCCCACTCN

NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTAGTTTATGTAGG
CAGACACTTAGCTCTCCAGCCTGCAGTGTGAACCTCTTTCCAAGAGCACA
GTATGCAGAGGGGAAAGGAAGGCAACATCACAGTGGGGGATTCTAAGAAC
CCTCCGCTAGCTAGCTGGTGGAGGTGACTGTGGGATTTGACAGAGTGCTG
CTGATCCTTTCCACAGCAGTCACATCTAGGGGTGTTCTACAATACACCCG
GTGAGTGCTGCTCAGGGCTGCCAAGGCTGTCAAACACAGGGGAAGTCAGG
AGAACTGAAAGTCAGAAGGAGCCCAAGCAGACAGCCTGTCAAATATAATG
TGCTTTCCTAGACTGGGTCTCAGAACAAAAGAGGACATTTGGTAAAATCT
AAAGAAATCTGAATATGCTGGGCAGTGGGGGCCGACGCCTTTAATCCCAG
CACTTGGAAGGCAGAGGCAGGCCGATTGATCTTTGTGAGTTTGAGGCATT
CTCTGTGACATCTGGGTTAAGGTGATTCATGTTATCATCCAGACTTTTAT
TTTTATGTGCCTGGGGCTTTTGCCTGCGTGTTACTGTATACTACCTGTAT
GCAGTGCCCACATAGGCCAGAAGAGGTGTCAAATTCCCTGAGACTGCAGT
TACAGTTTTGAGATCTCATGTAAGTGCTGGGAGCTGAACCCCTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_e08.b1 MSMg01no532_e08.b1 CHROMAT_FILE:
MSMg01no532_e08.b1 PHD_FILE: MSMg01no532_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:09 2005
         (570 letters)



>mm_chr10_39665757_39666726
          Length = 970

 Score = 1071 bits (554), Expect = 0.0
 Identities = 566/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagttaagagacaataaaatactgcctaatgacccttgccaaatcaggagcctggtaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagttaagagacaataaaatactgcctaatgacccttgccaaatcaggagcctggtaac 260

                                                                       
Query: 61  aagaaattaagatcgccaaaccatgaaatacttaagtaacacgctggaattacagaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaattaagatcgccaaaccatgaaatacttaagtaacacgctggaattacagaacat 320

                                                                       
Query: 121 ttcaaaacatcttagcatttcctacacatggacctcagaacataaatccgcagagaccac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttcaaaacatcttagcatttcctacacatggacctcagaacataaatccgcaaagaccac 380

                                                                       
Query: 181 tgaaacttcactgatgatctatcttctctggttggcctagtgagaggtgtggattcaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaacttcactgatgatctatcttctctggttggcctagtgagaggtgtggattcaagg 440

                                                                       
Query: 241 aaaccaagggcttaagatctgaagactggtagagtgtttggctaacccaggcagagttta 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaccaagggctgaagatctgaagactggtagagtgtttggctaacccaggcagagttta 500

                                                                       
Query: 301 accctccaatttcccacttccccaaggaacagagaatcagtaaaaactctgttttctctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accctccaatttcccacttccccaaggaacagagaatcagtaaaaactctgttttctctc 560

                                                                       
Query: 361 ttagcacctttttccttgcttctgacaaggtacttgctatagcttgaatatgaaatgacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagcacctttttccttgcttctgacaaggtacttgctatagcttgaatatgaaatgacc 620

                                                                       
Query: 421 cacccctgcccccaatgggcttacctgtttcaacatttggttcctgtctgggggcaatgt 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacccctgcccccaatggacttacctgtttcaacatttggttcctgtctgggggcaatgt 680

                                                                       
Query: 481 tttagaggattatggaacctttaggaagtagggttcctctggaggaagtggggctccctg 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttagagaattatggaacctttaggaagtagggttcctctggaggaagtggggctccctg 740

                                         
Query: 541 gaggaagtgaggctccctggaggaagtgca 570
           ||||||||||||||||||||||||||||||
Sbjct: 741 gaggaagtgaggctccctggaggaagtgca 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |