BAC Information

Click to search

BAC

Clone NameMSMg01-533F07
Chromosome10 (Build37)
Map Location 65,492,736 - 65,493,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik, Reep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533F07.T7 (MSMg01no533_f07.b1)MSMg01-533F07.TJ (MSMg01no533_f07.g1)
ACCAG601278AG601279
length734747
length of high quality
(start - end)		633 (55 - 687)668 (80 - 747)
definitionCHROMAT_FILE: MSMg01no533_f07.b1 PHD_FILE: MSMg01no533_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:31 2005CHROMAT_FILE: MSMg01no533_f07.g1 PHD_FILE: MSMg01no533_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTATNNTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTTTGTTAGTATTTTGTTGAAAAAATTTTACATCAA
TTCAAGAAGTCATAAAATATATAGTATTTTTAAAAATAACTTTTGTCCAG
TCTTAACATTTAGGTTAATTGTGGTCACTACAAAGTGAGTAGGGAAACAT
TTCTCCCAAATTAACATTCTAGCAGACCTATTTATTGTCAAGATTTTATT
GTTGAAAGGGTTTTTACAAACTCCACTTCTTTCCAGATGGGTCAGCTCTC
TGTCTGTTTTGAAAATTTTATTTTCACACATGATGGGAATTTTCATCACT
GTGCCTTCTATCTTTTTTTTTTTTGAGAGAGTATTTAAAATGCATTATAT
ATCTGTGCACATTTTCTTTTTTTTTCCATTTTTTATTAGGTATTTCGCTC
ATTTACATTTGCAATGCTATACCAAAAGTCCCCCATAGCCACCCACCCCC
TCTCCCCTACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCCCCTGTAC
TGGTGCCTTCTATCTTTTTTAAATTATAAAATCTTTGGAATTCACGGAGT
CACTTGAATTTGTGGGTTTACAGTGCTCATCCTATTCAGAAAAATTACCC
CATTATCATTTGAAGGATGATTCCCCTTATTTTTCTCTTCTAGNTTTTAT
ATTTATATTATCTCATATTATAATACTCGTAGTC

NNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAACTATTCTGGCCTCCA
TGGGTACTCACACACATGTACCTGCTCTCAGACACAGTCAAATTGAAAAG
TAAAATGAAAATATCTGAAAAGGCCCTAAGAAGTTAAACAAGAAGGAAGG
CCCAAGTGAGAATGCTTAATCCCATATAGAAGAGGGAACAAAATTATCAT
CGGAGAAAGGGACCTGCATAGGAGAAAGCAGGAGAGGGAAATGGGGTAGG
ATCAGGTATGGGGCAAGACAGGAGAGAAGTCCAGATGGTCAAAGAACGAA
TGAAAATATACAGCTGCAGGGGATTGGAGAACCTCTAGAAAGTCCAAGAG
GCCTGGGATGGGAGAAGCTCCGAGGACTCAGTAAGGGTGAGCCTAGTCGA
AATTCCCAACAGTGGGGATATGAAACCTGAAGAGACCACCTCCATTAGTT
AAAAGGGACCCAAGAGGGATGGAAAAATGAACCCGCATTCAAAATTTCAA
CCCAAAATTGTTCCTATCTAAAAGAAATACAAGGTGTGGGGACAAAGCAA
GCAGAAAGTGAAAGAATGCAGACCAGCAACTGGCCCTACTTGGGATACGT
CCCATGAGCAGTTACCAATCTCTGACACTTACTGTTGTTATATTGTGCTT
ATAGACAAGAGCCGAGCATGGTTGTCTGCTGAGAAGGCCTAACAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_f07.b1 MSMg01no533_f07.b1 CHROMAT_FILE:
MSMg01no533_f07.b1 PHD_FILE: MSMg01no533_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:31 2005
         (633 letters)



>mm_chr10_65492372_65493404
          Length = 1033

 Score =  511 bits (264), Expect = e-149
 Identities = 310/354 (87%), Gaps = 44/354 (12%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttgttagtattttgttgaaaaaattttacatcaattcaagaagtcataaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gaattcctttgttagtattttgttgaaaaaattttacatcaattcaagaagtcataaaat 659

                                                                       
Query: 65  atatagtatttttaaaaataacttttgtccagtcttaacatttaggttaattgtggtcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 atatagtatttttaaaaataacttttgtccagtcttaacatttaggttaattgtggtcac 599

                                                                       
Query: 125 tacaaagtgagtagggaaacatttctcccaaattaacatt-------------------- 164
           ||||||||||||||||||||||||||||||||||||||||                    
Sbjct: 598 tacaaagtgagtagggaaacatttctcccaaattaacattcttcgttggattgtataagt 539

                                                                       
Query: 165 ------------------------ctagcagacctatttattgtcaagattttattgttg 200
                                   ||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgatactaatatatttatgatttactagcagacctatttattgtcaagattttattgttg 479

                                                                       
Query: 201 aaagggtttttacaaactccacttctttccagatgggtcagctctctgtctgttttgaaa 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaagggtttttacaaactccacttctttccagatgggtcagctctctgtctgttttgaaa 419

                                                                 
Query: 261 attttattttcacacatgatgggaattttcatcactgtgccttctatctttttt 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 attttattttcacacatgatgggaattttcatcactgtgccttctatctttttt 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |