Query= MSMg01no533_g06.b1 MSMg01no533_g06.b1 CHROMAT_FILE:
MSMg01no533_g06.b1 PHD_FILE: MSMg01no533_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:35 2005
(545 letters)
>mm_chr10_90300515_90301459
Length = 945
Score = 1000 bits (517), Expect = 0.0
Identities = 537/547 (98%), Gaps = 6/547 (1%)
Strand = Plus / Minus
Query: 5 gaattctcactaataatcgtaaatttagagaaaagtacactcagtgaatatctttaccca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gaattctcactaataatcgtaaatttagagaaaagtacactcagtgaatatctttaccca 861
Query: 65 tttctactttctaccaaggagcaatagaaacacaaagttcgaggggaaaaagaaaacccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 tttctactttctaccaaggagcaatagaaacacaaagttcgaggggaaaaagaaaacccc 801
Query: 125 aaagaagcccacccagtgcaactgaagacttcaggctgtccactctact------ggggg 178
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 800 aaagaagcccacccagtgcaactgaagacttcaggctgtccactctactggggggggggg 741
Query: 179 gggaattcatcaagtcctaggtttaggaaccttcatctaagtatcaaaaagatattcctg 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggggattcatcaagtcctaggtttaggaaccttcatctaagtatcaaaaagatattcctg 681
Query: 239 gcctctcctccccacactcccaaagtggagagacgaaagctggtaacagaggcatttaac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcctctcctccccacactcccaaagtggagagacgaaagctggtaacagaggcatttaac 621
Query: 299 agaacctaagaaaagcacagggcatccaaccagggctgcatagagcttgagctgaaccat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agaacctaagaaaagcacagggcatccaaccagggctgcatagagcttgagctgaaccat 561
Query: 359 tgctgcaatttctttggactgcaaagtagctgagtaagaaaccacaactaaatgggtttc 418
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 560 tgctgcaatttctttggactgcaaagtagctgggcaagaaaccacaactaaatgggtttc 501
Query: 419 ccccaaaaggttgggggagatgtaagaagttgctcacaccatgtttaggcacagctgccc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccccaaaaggttgggggagatgtaagaagttgctcacaccatgtttaggcacagctgccc 441
Query: 479 aggcaccagggagaccaaaagaaatagcatggcagatacatcagtgtttgaaagagaagg 538
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 aggcaccagggagaccaaaagaaatagcagggcagatacatcagtgtttgaaagagaagg 381
Query: 539 tggatga 545
|||||||
Sbjct: 380 tggatga 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_g06.g1 MSMg01no533_g06.g1 CHROMAT_FILE:
MSMg01no533_g06.g1 PHD_FILE: MSMg01no533_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:35 2005
(660 letters)
>mm_chr10_90264734_90265793
Length = 1060
Score = 1230 bits (636), Expect = 0.0
Identities = 654/660 (99%), Gaps = 1/660 (0%)
Strand = Plus / Plus
Query: 1 cagacggataaggatgacagaagagagggacaatcatggaaggcacagaagacatctgag 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacagataaggatgacagaagagagggacaatcatggaaggcacagaagacatctgag 260
Query: 61 agatgagtcctttgaaccagatacggtagatagtttacagtggttggttttgatactttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgagtcctttgaaccagatacggtagatagtttacagtggttggttttgatactttc 320
Query: 121 ctcactgttgaagcaaagtattggaaaaaaaaaatccagcccgtggaaagatggctttat 180
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 321 ctcactgttgaagcaaagtattggaaaaaaaaattccagcccgtggaaagacggctttat 380
Query: 181 tttggctcacagttattttggaagcctgtcttagtggggaaggtaagttaacaaagagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggctcacagttattttggaagcctgtcttagtggggaaggtaagttaacaaagagaa 440
Query: 241 tgtggtgtctgatggattgcatctgccttccccaagcagttgctctatctgccattgctc 300
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tgtggtggctgatggattgcatctgccttccccaagcagttgctctatctgctattgctc 500
Query: 301 atccactttcctttttagttaaatcctggagggtgggtcttcccaccttaatttacttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccactttcctttttagttaaatcctggagggtgggtcttcccaccttaatttacttaa 560
Query: 361 tctagataatccttagattggcccagagaccaacctaatctagataatccctcccaggta 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tctagataatccttagattggcccagagaccaacctaatctagataa-ccctcccaggta 619
Query: 421 tgcctaaaggcttatcccctataggtgatcctagaacctgacaagatgataataacatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcctaaaggcttatcccctataggtgatcctagaacctgacaagatgataataacatta 679
Query: 481 accttcccaaagataaaattaacatttgcaattcccttagatcaggagttgaggggactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 accttcccaaagataaaattaacatttgcaattcccttagatcaggagttgaggggactt 739
Query: 541 ctcatttattgtcccagctttcatggtgtgtgtttgttctaagctatgtgtgtgacatgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctcatttattgtcccagctttcatggtgtgtgtttgttctaagctatgtgtgtgacatgt 799
Query: 601 gacaaatgttctctagatgactgttgaatatgtgaaaaataggaagagagagagagaagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gacaaatgttctctagatgactgttgaatatgtgaaaaataggaagagagagagagaagg 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
