BAC Information

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BAC

Clone NameMSMg01-533H01
Chromosome10 (Build37)
Map Location 104,397,637 - 104,398,186
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533H01.T7 (MSMg01no533_h01.b1)MSMg01-533H01.TJ (MSMg01no533_h01.g1)
ACCAG601362AG601363
length712744
length of high quality
(start - end)
495 (58 - 552)635 (83 - 717)
definitionCHROMAT_FILE: MSMg01no533_h01.b1 PHD_FILE: MSMg01no533_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:39 2005CHROMAT_FILE: MSMg01no533_h01.g1 PHD_FILE: MSMg01no533_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTATTTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTTGTTCTGCTCTGAGCGCCATTTTTTAATGCG
GTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGG
ATATTAGTCCCCTATCTGATTTGGGATAGGTAAAGATCCTTTCCCAATCT
GTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCT
TTGCAATTTTATGAGGTCCCATTTATTGATTCTTGATCTTACAGCACAAG
CCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTTGAGG
CTTTTCCCTACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATGTT
GAGTTCCTTAATCCACTTAGATTTGACCTTACTACAAGGAGATAGAAATG
GATCAATTCTCATTCTTCTACATGATAACAGCCAGTTGTGCCTAGCACCA
TTTGTTGAAAATGCTGTCCTTTTTCCACTTGATGGTTTTAGCTCCCTTGT
CAAAGATTATGTACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTC
TGTTCCATTGGTCTACTTGTCTGTCACTATACCAATACCATGCAGTTTTT
ATCACAATTGCTCTGTAGTACAGCTTTAGGCCCTGCATGGTGATTCCACC
AGAGGTACTTTN
NTTTTCCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTATAAAATTTGTA
CCGTGATTTCATAGAGTAGGAGGTACCACCNGCCTTCTTCCAACCCAACT
TACATAAATGTGTACATAAACTTCTGCTTCAAAACAGAAAATAAACTAGC
TATGCTCATGGGATAAAAGGGTTTGTTACTGTATTTCACAATAGTATCTA
TTTGATTCTGTATATATTTATTGCTGCATATAAAAACCAAGTCTGATATT
TAACATTAACTTGAGCTGTGACAAATATATAGCTGTGATGTGGGATATAT
CCTCAGGTACTTATGCCCAGAATACCGTGGAGAGTGTTGAGTTGAATATT
CTTTAAATTATGACATTATATTCTAAAGAAATCTTTTTTAAATTTAATTA
ATTAATTATTTTTAAATTTTATTGTATTTTTTCGTGTTTGTTTGTTTGTT
TGTTTTTTTTGAGACAGGATTTCTGTATGTATCCCTGGCTGTCCTGGAAC
TCACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCTCTG
CCCGAGTGCTAGGATTAAAGGTGTGCACCACCAGCTGAGCACGCCAGGAA
AAGCAAGCCAGTAAGGAACATCTCTCCATGATCTCTGCATCAGCTCCTGC
TTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_h01.g1 MSMg01no533_h01.g1 CHROMAT_FILE:
MSMg01no533_h01.g1 PHD_FILE: MSMg01no533_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:39 2005
         (635 letters)



>mm_chr10_104397637_104398670
          Length = 1034

 Score = 1004 bits (519), Expect = 0.0
 Identities = 542/551 (98%), Gaps = 4/551 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtataaaatttgtaccgtgatttcatagagtaggaggtaccaccngccttcttcca 60
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 550 cacagtataaaatttgttccgtgatttcatagagtaggaggtaccacc-gccttcttcca 492

                                                                       
Query: 61  acccaacttacataaatgtgtacataaacttctgcttcaaaacagaaaataaactagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acccaacttacataaatgtgtacataaacttctgcttcaaaacagaaaataaactagcta 432

                                                                       
Query: 121 tgctcatgggataaaagggtttgttactgtatttcacaatagtatctatttgattctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgctcatgggataaaagggtttgttactgtatttcacaatagtatctatttgattctgta 372

                                                                       
Query: 181 tatatttattgctgcatataaaaaccaagtctgatatttaacattaacttgagctgtgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tatatttattgctgcatataaaaaccaagtctgatatttaacattaacttgagctgtgac 312

                                                                       
Query: 241 aaatatatagctgtgatgtgggatatatcctcaggtacttatgcccagaataccgtggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 311 aaatatatagctgtgatgtgggatatatcctcaggtacttatgcccagaatgccgtggag 252

                                                                       
Query: 301 agtgttgagttgaatattctttaaattatgacattatattctaaagaaatcttttttaaa 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agtgttgagttggatattctttaaattatgacattatattctaaagaaatcttttttaaa 192

                                                                       
Query: 361 tttaattaattaattatttttaaattttattgtattttttcgtgtttgtttgtttgtttg 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 191 tttaattaattaattatttttaaattttattgtatttttttgtgtttgtttgtttgtttg 132

                                                                       
Query: 421 ttt---tttttgagacaggatttctgtatgtatccctggctgtcctggaactcactttgt 477
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tttgtttttttgagacaggatttctgtatgtatccctggctgtcctggaactcactttgt 72

                                                                       
Query: 478 agatcaggctggcctcgaactcagaaatcagcctgcctctgcccgagtgctaggattaaa 537
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  agaccaggctggcctcgaactcagaaatcagcctgcctctgcccgagtgctaggattaaa 12

                      
Query: 538 ggtgtgcacca 548
           |||||||||||
Sbjct: 11  ggtgtgcacca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1034
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1024
Effective search space:   640000
Effective search space used:   640000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)